Variant report

Variant	rs12790633
Chromosome Location	chr11:32503194-32503195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32502234..32504053-chr11:32516469..32518495,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10219285	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031799	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031800	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031801	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031813	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271863	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272661	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12276814	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277550	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282084	0.88[EUR][1000 genomes]
rs12789194	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789525	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12794418	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798270	0.81[EUR][1000 genomes]
rs12805730	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12808723	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17748371	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35128594	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35245711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113208	0.91[EUR][1000 genomes]
rs7115617	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7118228	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71466594	1.00[ASN][1000 genomes]
rs71466595	0.83[EUR][1000 genomes]
rs9300011	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300012	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300013	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651595	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32500800-32510200	Weak transcription	Right Atrium	heart
2	chr11:32502800-32503200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr11:32502800-32503400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:32502800-32504000	Enhancers	K562	blood
5	chr11:32503000-32503200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:32503000-32503200	Enhancers	Fetal Muscle Leg	muscle
7	chr11:32503000-32503400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:32503000-32503400	Enhancers	Brain Hippocampus Middle	brain

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