Variant report
| Variant | rs7118228 |
|---|---|
| Chromosome Location | chr11:32512428-32512429 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:32510736..32513682-chr11:32515069..32517545,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10219285 | 0.86[EUR][1000 genomes] |
| rs10835929 | 0.88[AFR][1000 genomes] |
| rs11031799 | 0.86[EUR][1000 genomes] |
| rs11031800 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11031801 | 0.86[EUR][1000 genomes] |
| rs11031813 | 0.85[EUR][1000 genomes] |
| rs12271863 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12272661 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs12276814 | 0.91[EUR][1000 genomes] |
| rs12277550 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12282084 | 0.81[EUR][1000 genomes] |
| rs12789194 | 0.93[EUR][1000 genomes] |
| rs12789525 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12790633 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12794418 | 0.82[EUR][1000 genomes] |
| rs12805730 | 0.82[EUR][1000 genomes] |
| rs12808723 | 0.83[EUR][1000 genomes] |
| rs35128594 | 0.82[EUR][1000 genomes] |
| rs35245711 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7113208 | 0.83[EUR][1000 genomes] |
| rs7115617 | 0.82[EUR][1000 genomes] |
| rs71466594 | 0.80[EUR][1000 genomes] |
| rs71466595 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9300011 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9300012 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9300013 | 0.85[EUR][1000 genomes] |
| rs9651595 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9667038 | 0.88[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832108 | chr11:32395937-32560583 | Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:32512400-32514400 | Weak transcription | Dnd41 | blood |
