Variant report

Variant	rs17763188
Chromosome Location	chr6:71453656-71453657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12202909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12203399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13174	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1577108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1716007	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4706458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4707843	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs615526	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71428200-71476400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:71435800-71477600	Weak transcription	HSMM	muscle
3	chr6:71436200-71470200	Weak transcription	NHDF-Ad	bronchial
4	chr6:71437200-71464800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:71438400-71468000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:71438400-71474000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:71439600-71474800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:71439800-71457000	Weak transcription	Right Ventricle	heart
9	chr6:71440400-71488800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:71441800-71474200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:71442800-71458800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:71443200-71488800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:71443400-71466000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:71443600-71457000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:71444400-71457000	Weak transcription	Aorta	Aorta
16	chr6:71444600-71464200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:71444800-71464200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:71444800-71523600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:71445000-71464800	Weak transcription	Adipose Nuclei	Adipose
20	chr6:71445200-71465000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:71445200-71482200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:71445600-71474000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:71447800-71500600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:71448000-71465400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:71451400-71454200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:71451400-71458400	Weak transcription	Esophagus	oesophagus
27	chr6:71451400-71464800	Weak transcription	Liver	Liver
28	chr6:71451400-71483200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:71451600-71462400	Weak transcription	Ovary	ovary
30	chr6:71451600-71464800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:71451600-71465000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:71451600-71467800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:71451800-71453800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:71451800-71453800	Weak transcription	Fetal Intestine Large	intestine
35	chr6:71451800-71454400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:71451800-71457000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:71451800-71457000	Weak transcription	Gastric	stomach
38	chr6:71451800-71464200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:71451800-71464800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:71451800-71464800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:71451800-71465000	Weak transcription	Dnd41	blood
42	chr6:71451800-71466000	Weak transcription	Fetal Brain Female	brain
43	chr6:71451800-71467800	Weak transcription	Brain Angular Gyrus	brain
44	chr6:71451800-71473600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:71451800-71474800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:71451800-71480200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:71451800-71481000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr6:71451800-71488200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:71451800-71488400	Weak transcription	Pancreas	Pancrea
50	chr6:71452000-71465000	Weak transcription	Primary B cells from peripheral blood	blood

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