Variant report

Variant	rs615526
Chromosome Location	chr6:71575487-71575488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12198750	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12202909	0.84[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12203399	0.83[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1577108	0.83[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1716007	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17763188	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1855437	0.90[AMR][1000 genomes]
rs4706458	0.83[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes]
rs4707843	0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4707854	0.85[AMR][1000 genomes]
rs7451673	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71564000-71575800	Weak transcription	Right Ventricle	heart
2	chr6:71569000-71575600	Weak transcription	Gastric	stomach
3	chr6:71571600-71576400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:71571600-71584000	Weak transcription	Pancreas	Pancrea
5	chr6:71572000-71575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:71574800-71575800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:71575400-71575600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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