Variant report

Variant	rs4707843
Chromosome Location	chr6:71387623-71387624
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71381415..71384047-chr6:71386712..71389077,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12198750	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12202909	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12203399	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13174	0.81[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1577108	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1716007	0.85[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes]
rs17763188	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1855437	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4706458	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707854	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs615526	0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7451673	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364097	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71379400-71388400	Weak transcription	Right Ventricle	heart
2	chr6:71379400-71394600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:71379600-71388200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:71380200-71396200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:71381000-71393800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:71382400-71394600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:71383000-71388400	Weak transcription	Right Atrium	heart
8	chr6:71383000-71390600	Weak transcription	Lung	lung
9	chr6:71383000-71394400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:71383000-71410400	Weak transcription	Gastric	stomach
11	chr6:71383200-71388400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:71383200-71394000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:71383200-71395000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:71383600-71389400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:71383800-71393200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:71384000-71394400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:71384000-71394600	Weak transcription	Left Ventricle	heart
18	chr6:71384600-71408800	Weak transcription	Pancreas	Pancrea
19	chr6:71386200-71392400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:71386200-71393200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:71386600-71387800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:71386800-71391000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:71386800-71394600	Weak transcription	Small Intestine	intestine
24	chr6:71387200-71388600	Weak transcription	Psoas Muscle	Psoas
25	chr6:71387200-71393600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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