Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTC14-2	chr3:180131962-180132245	XLOC_002937
2	lnc-TTC14-2	chr3:180131970-180132245	XLOC_002937
3	lnc-TTC14-2	chr3:180131970-180132245	XLOC_002937
4	lnc-TTC14-2	chr3:180131969-180132245	NONHSAT093431

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1532485	1.00[CEU][hapmap]
rs17707963	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17708913	0.81[EUR][1000 genomes]
rs28385473	0.81[EUR][1000 genomes]
rs28495789	0.81[EUR][1000 genomes]
rs62290974	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62291005	0.82[EUR][1000 genomes]
rs62291006	0.81[EUR][1000 genomes]
rs62291007	0.81[EUR][1000 genomes]
rs62291008	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62291009	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6770664	1.00[CEU][hapmap]
rs7626274	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9290705	0.86[EUR][1000 genomes]
rs9819839	0.88[EUR][1000 genomes]
rs9832227	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9837678	0.81[EUR][1000 genomes]
rs9846858	0.81[EUR][1000 genomes]
rs9847201	0.88[EUR][1000 genomes]
rs9858483	1.00[CEU][hapmap]
rs9864401	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9864959	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9866580	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9872076	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180128200-180133800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:180128400-180133400	Weak transcription	NHEK	skin
3	chr3:180128400-180133800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:180128800-180133600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:180131400-180136000	Enhancers	HMEC	breast
6	chr3:180131600-180132400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:180131800-180132000	Enhancers	Ovary	ovary

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