Variant report

Variant	rs17707963
Chromosome Location	chr3:180155484-180155485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1353679	0.83[EUR][1000 genomes]
rs1532485	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1603658	0.87[EUR][1000 genomes]
rs17708913	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17764356	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28385473	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28495789	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62290974	0.83[AFR][1000 genomes]
rs62291004	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62291005	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62291006	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62291007	0.92[EUR][1000 genomes]
rs62291008	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62291009	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62291043	0.87[EUR][1000 genomes]
rs62291045	0.85[EUR][1000 genomes]
rs62291048	0.85[EUR][1000 genomes]
rs6770664	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6774942	0.87[EUR][1000 genomes]
rs7626274	0.88[EUR][1000 genomes]
rs9290705	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9819839	0.99[EUR][1000 genomes]
rs9837678	0.89[EUR][1000 genomes]
rs9846858	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9847201	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9857489	0.82[EUR][1000 genomes]
rs9858483	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9864959	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9866580	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9872076	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9876153	0.87[EUR][1000 genomes]
rs9877497	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180153600-180155600	Weak transcription	HMEC	breast
2	chr3:180154600-180157800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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