Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1532485	1.00[CEU][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes]
rs1603658	0.95[EUR][1000 genomes]
rs17707963	0.83[EUR][1000 genomes]
rs17708913	0.91[EUR][1000 genomes]
rs17764356	1.00[CEU][hapmap]
rs28385473	0.91[EUR][1000 genomes]
rs28495789	0.91[EUR][1000 genomes]
rs62291004	0.88[EUR][1000 genomes]
rs62291005	0.90[EUR][1000 genomes]
rs62291006	0.91[EUR][1000 genomes]
rs62291007	0.91[EUR][1000 genomes]
rs62291008	0.90[EUR][1000 genomes]
rs62291009	0.90[EUR][1000 genomes]
rs62291043	0.95[EUR][1000 genomes]
rs62291045	0.93[EUR][1000 genomes]
rs62291048	0.93[EUR][1000 genomes]
rs6443700	0.88[YRI][hapmap]
rs6770664	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6774942	0.95[EUR][1000 genomes]
rs6791597	0.84[MEX][hapmap];0.88[YRI][hapmap]
rs7645817	0.87[YRI][hapmap]
rs7647210	0.84[MEX][hapmap];0.88[YRI][hapmap]
rs9290705	0.86[EUR][1000 genomes]
rs9819839	0.84[EUR][1000 genomes]
rs9837678	0.93[EUR][1000 genomes]
rs9846858	0.91[EUR][1000 genomes]
rs9847201	0.84[EUR][1000 genomes]
rs9857489	0.91[EUR][1000 genomes]
rs9858483	1.00[CEU][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs9864959	0.84[EUR][1000 genomes]
rs9866580	0.84[EUR][1000 genomes]
rs9872076	0.84[EUR][1000 genomes]
rs9876153	0.95[EUR][1000 genomes]
rs9877497	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180282600-180284600	Enhancers	Ovary	ovary
2	chr3:180284200-180284800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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