Variant report

Variant	rs9819839
Chromosome Location	chr3:180158477-180158478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1353679	0.84[EUR][1000 genomes]
rs1532485	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1603658	0.88[EUR][1000 genomes]
rs17707963	0.99[EUR][1000 genomes]
rs17708913	0.93[EUR][1000 genomes]
rs17764356	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs28385473	0.93[EUR][1000 genomes]
rs28495789	0.93[EUR][1000 genomes]
rs62291004	0.91[EUR][1000 genomes]
rs62291005	0.92[EUR][1000 genomes]
rs62291006	0.93[EUR][1000 genomes]
rs62291007	0.93[EUR][1000 genomes]
rs62291008	0.92[EUR][1000 genomes]
rs62291009	0.92[EUR][1000 genomes]
rs62291043	0.88[EUR][1000 genomes]
rs62291045	0.86[EUR][1000 genomes]
rs62291048	0.86[EUR][1000 genomes]
rs6770664	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6774942	0.88[EUR][1000 genomes]
rs7626274	0.89[EUR][1000 genomes]
rs9290705	0.98[EUR][1000 genomes]
rs9832227	0.81[EUR][1000 genomes]
rs9837678	0.90[EUR][1000 genomes]
rs9846858	0.93[EUR][1000 genomes]
rs9847201	1.00[EUR][1000 genomes]
rs9857489	0.84[EUR][1000 genomes]
rs9858483	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9864959	1.00[EUR][1000 genomes]
rs9866580	1.00[EUR][1000 genomes]
rs9872076	1.00[EUR][1000 genomes]
rs9876153	0.88[EUR][1000 genomes]
rs9877497	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180157800-180159000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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