Variant report

Variant	rs17767266
Chromosome Location	chr14:71681331-71681332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71678893..71680669-chr14:71681076..71683305,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258517	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10130213	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158898	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs11844320	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850267	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851589	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109116	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177822	0.89[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17178206	1.00[YRI][hapmap]
rs17767296	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767392	1.00[YRI][hapmap]
rs17767410	1.00[YRI][hapmap]
rs1990035	0.94[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108707	1.00[YRI][hapmap]
rs34674149	1.00[YRI][hapmap]
rs4899390	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902916	0.89[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902917	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902918	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902922	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55737377	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59985720	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60526802	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60536344	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61174376	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989206	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989207	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989208	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574006	0.89[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574007	0.85[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146169	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150921	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153194	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723966	1.00[YRI][hapmap]
rs725673	1.00[YRI][hapmap]
rs72726657	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726677	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005089	0.89[CEU][hapmap]
rs8005615	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005925	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007068	1.00[YRI][hapmap]
rs8010203	0.89[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1036929	chr14:71469148-71683412	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71679600-71682200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:71679800-71682000	Weak transcription	Spleen	Spleen
3	chr14:71679800-71685000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:71680400-71682200	Enhancers	Stomach Mucosa	stomach
5	chr14:71680600-71702600	Weak transcription	Brain Angular Gyrus	brain
6	chr14:71680800-71691600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:71680800-71691800	Weak transcription	Brain Cingulate Gyrus	brain

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