Variant report

Variant	rs72726677
Chromosome Location	chr14:71695208-71695209
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10130213	1.00[ASN][1000 genomes]
rs11158898	0.84[AMR][1000 genomes]
rs11844320	1.00[ASN][1000 genomes]
rs11850267	1.00[ASN][1000 genomes]
rs11851589	1.00[ASN][1000 genomes]
rs17109116	1.00[ASN][1000 genomes]
rs17177822	1.00[ASN][1000 genomes]
rs17767266	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767296	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1990035	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899390	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902916	1.00[ASN][1000 genomes]
rs4902917	1.00[ASN][1000 genomes]
rs4902918	1.00[ASN][1000 genomes]
rs4902922	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55737377	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59985720	1.00[ASN][1000 genomes]
rs60526802	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60536344	1.00[ASN][1000 genomes]
rs61174376	1.00[ASN][1000 genomes]
rs61989206	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989207	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989208	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574006	1.00[ASN][1000 genomes]
rs6574007	1.00[ASN][1000 genomes]
rs7146169	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150921	1.00[ASN][1000 genomes]
rs7153194	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726657	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005089	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8005615	1.00[ASN][1000 genomes]
rs8005925	1.00[ASN][1000 genomes]
rs8010203	1.00[ASN][1000 genomes]
rs8017895	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71680600-71702600	Weak transcription	Brain Angular Gyrus	brain
2	chr14:71687400-71699000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:71692000-71698600	Weak transcription	K562	blood
4	chr14:71694600-71695800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:71694800-71695600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:71694800-71695800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:71694800-71695800	Enhancers	Pancreas	Pancrea
8	chr14:71695000-71695400	Enhancers	Stomach Mucosa	stomach
9	chr14:71695000-71695800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:71695000-71695800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:71695000-71696200	Enhancers	HepG2	liver
12	chr14:71695200-71695400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr14:71695200-71695600	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:71695200-71695600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr14:71695200-71695600	Enhancers	Esophagus	oesophagus
16	chr14:71695200-71695800	Enhancers	Brain Substantia Nigra	brain

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