Variant report

Variant rs17770213
Chromosome Location chr4:7896866-7896867
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:7878200-7898400 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr4:7883200-7904400 Weak transcription Gastric stomach
3 chr4:7886800-7904400 Weak transcription Small Intestine intestine
4 chr4:7889200-7901200 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr4:7892000-7897000 Enhancers Brain Germinal Matrix brain
6 chr4:7892400-7897000 Enhancers ES-I3 Cell Line embryonic stem cell
7 chr4:7892600-7903800 Weak transcription Stomach Mucosa stomach
8 chr4:7893000-7902200 Weak transcription Brain Inferior Temporal Lobe brain
9 chr4:7893200-7903400 Weak transcription Fetal Kidney kidney
10 chr4:7893200-7905600 Weak transcription Brain Angular Gyrus brain
11 chr4:7893600-7900400 Weak transcription HUES64 Cell Line embryonic stem cell
12 chr4:7893800-7902600 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr4:7894200-7901000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr4:7894200-7902000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr4:7894200-7912400 Weak transcription Fetal Intestine Large intestine
16 chr4:7894400-7898200 Weak transcription H9 Cell Line embryonic stem cell
17 chr4:7894400-7900400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr4:7894400-7901000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr4:7894400-7901000 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr4:7894400-7901400 Weak transcription Fetal Lung lung
21 chr4:7894400-7904400 Weak transcription Left Ventricle heart
22 chr4:7894400-7906200 Weak transcription Placenta Amnion Placenta Amnion
23 chr4:7894600-7898000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr4:7894600-7898800 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr4:7894600-7898800 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr4:7894600-7899600 Weak transcription Ovary ovary
27 chr4:7894600-7900400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr4:7894600-7901000 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr4:7894600-7902800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr4:7894800-7899600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr4:7894800-7900200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr4:7895000-7898800 Weak transcription NHDF-Ad bronchial
33 chr4:7895000-7899000 Weak transcription NHLF lung
34 chr4:7895000-7900200 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr4:7895000-7901000 Weak transcription HSMMtube muscle
36 chr4:7895000-7901200 Weak transcription HUVEC blood vessel
37 chr4:7895200-7899400 Enhancers Fetal Heart heart
38 chr4:7895400-7897000 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr4:7895400-7897000 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
40 chr4:7895400-7897000 Enhancers Fetal Thymus thymus
41 chr4:7895400-7897000 Enhancers Right Atrium heart
42 chr4:7895600-7898200 Enhancers Fetal Brain Female brain
43 chr4:7895600-7907600 Weak transcription Colonic Mucosa Colon
44 chr4:7895800-7897000 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr4:7895800-7897000 Enhancers Esophagus oesophagus
46 chr4:7895800-7897000 Flanking Active TSS HMEC breast
47 chr4:7895800-7897600 Enhancers Fetal Brain Male brain
48 chr4:7896000-7897000 Genic enhancers Fetal Muscle Trunk muscle
49 chr4:7896000-7897000 Genic enhancers Fetal Stomach stomach
50 chr4:7896000-7897600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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