Variant report

Variant	rs17784100
Chromosome Location	chr9:16064646-16064647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11787624	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11789332	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11789951	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11792610	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17711267	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17784348	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17784476	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62550912	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62550914	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62550917	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62550918	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7036234	0.85[ASN][1000 genomes]
rs7047897	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525782	chr9:16061960-16071439	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2757319	chr9:16063191-16082467	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2759672	chr9:16063191-16082467	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2756177	chr9:16063191-16082467	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16048600-16071400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:16058600-16065200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16058600-16069400	Weak transcription	Fetal Lung	lung
4	chr9:16058600-16069600	Weak transcription	NHLF	lung
5	chr9:16058800-16066000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:16060800-16065000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:16060800-16065600	Enhancers	HMEC	breast
8	chr9:16062200-16065000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:16062200-16065000	Enhancers	NH-A	brain
10	chr9:16063400-16065600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:16063800-16069000	Weak transcription	Osteobl	bone
12	chr9:16063800-16069200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:16064000-16065400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:16064200-16065200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:16064200-16066000	Weak transcription	Hela-S3	cervix
16	chr9:16064200-16069000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:16064600-16065400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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