Variant report

Variant	rs17784348
Chromosome Location	chr9:16075645-16075646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11787624	0.85[EUR][1000 genomes]
rs11789332	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11789951	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792610	0.88[EUR][1000 genomes]
rs17711267	0.86[EUR][1000 genomes]
rs17784100	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17784476	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62550912	0.86[EUR][1000 genomes]
rs62550914	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62550917	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62550918	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047897	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757319	chr9:16063191-16082467	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2759672	chr9:16063191-16082467	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2756177	chr9:16063191-16082467	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16074600-16076200	Enhancers	Osteobl	bone
2	chr9:16074800-16075800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:16074800-16076000	Enhancers	NH-A	brain
4	chr9:16074800-16076200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:16074800-16076200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:16075000-16076200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:16075400-16077200	Enhancers	Colon Smooth Muscle	Colon
8	chr9:16075600-16076200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links