Variant report

Variant	rs17785609
Chromosome Location	chr13:70178061-70178062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12429156	1.00[ASN][1000 genomes]
rs1424317	1.00[CHB][hapmap]
rs17070810	1.00[CHB][hapmap]
rs17085369	1.00[CHB][hapmap]
rs17085372	1.00[CHB][hapmap]
rs17085375	1.00[CHB][hapmap]
rs17085391	1.00[CHB][hapmap]
rs17085397	1.00[CHB][hapmap]
rs17085405	1.00[CHB][hapmap]
rs17787264	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1932988	1.00[ASN][1000 genomes]
rs7317932	1.00[ASN][1000 genomes]
rs7335970	1.00[ASN][1000 genomes]
rs73520084	1.00[ASN][1000 genomes]
rs73522005	1.00[ASN][1000 genomes]
rs73522016	1.00[ASN][1000 genomes]
rs74092464	1.00[ASN][1000 genomes]
rs9529634	1.00[CHB][hapmap]
rs9542073	1.00[CHB][hapmap]
rs9564615	1.00[CHB][hapmap]
rs9592635	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1833005	chr13:70090874-70180509	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1049684	chr13:70126871-70333445	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70175800-70183400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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