Variant report

Variant	rs73522016
Chromosome Location	chr13:70294543-70294544
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1019580	1.00[ASN][1000 genomes]
rs1019581	1.00[ASN][1000 genomes]
rs12428263	1.00[ASN][1000 genomes]
rs12428267	1.00[ASN][1000 genomes]
rs12429156	1.00[ASN][1000 genomes]
rs12429374	1.00[ASN][1000 genomes]
rs12430318	1.00[ASN][1000 genomes]
rs12431067	1.00[ASN][1000 genomes]
rs12877491	1.00[ASN][1000 genomes]
rs1424317	1.00[ASN][1000 genomes]
rs17085391	1.00[ASN][1000 genomes]
rs17785609	1.00[ASN][1000 genomes]
rs17787264	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932988	1.00[ASN][1000 genomes]
rs2325245	1.00[ASN][1000 genomes]
rs35032606	1.00[ASN][1000 genomes]
rs35231947	1.00[ASN][1000 genomes]
rs35788056	1.00[ASN][1000 genomes]
rs7317932	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335970	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73520084	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522005	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74092464	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1049684	chr13:70126871-70333445	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900482	chr13:70186605-70383876	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv482460	chr13:70240630-70419347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70293400-70295400	Enhancers	Fetal Intestine Small	intestine
2	chr13:70293400-70295600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr13:70294200-70295000	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr13:70294400-70294600	Enhancers	Liver	Liver
5	chr13:70294400-70295000	Enhancers	HepG2	liver

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