Variant report

Variant	rs12429156
Chromosome Location	chr13:70263469-70263470
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1019580	1.00[ASN][1000 genomes]
rs1019581	1.00[ASN][1000 genomes]
rs12428263	1.00[ASN][1000 genomes]
rs12428267	1.00[ASN][1000 genomes]
rs12429374	1.00[ASN][1000 genomes]
rs12430318	1.00[ASN][1000 genomes]
rs12431067	1.00[ASN][1000 genomes]
rs12877491	1.00[ASN][1000 genomes]
rs1424317	1.00[ASN][1000 genomes]
rs17085391	1.00[ASN][1000 genomes]
rs17785609	1.00[ASN][1000 genomes]
rs17787264	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325245	1.00[ASN][1000 genomes]
rs35032606	1.00[ASN][1000 genomes]
rs35231947	1.00[ASN][1000 genomes]
rs35788056	1.00[ASN][1000 genomes]
rs7317932	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335970	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73520084	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522005	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522016	1.00[ASN][1000 genomes]
rs74092464	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1049684	chr13:70126871-70333445	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900482	chr13:70186605-70383876	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv562207	chr13:70197635-70288258	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv482460	chr13:70240630-70419347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv977355	chr13:70257747-70263833	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70258800-70263600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:70259400-70265000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:70259800-70264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:70259800-70264800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:70260000-70264600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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