The 2.0 version of rSNPBase

Variant report

Variant rs17788255
Chromosome Location chr1:214590254-214590255
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214560000-214592000 Weak transcription Hela-S3 cervix
2 chr1:214572600-214612600 Weak transcription Fetal Intestine Small intestine
3 chr1:214573800-214591000 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:214575200-214591200 Weak transcription Ovary ovary
5 chr1:214575200-214592000 Weak transcription Placenta Placenta
6 chr1:214575200-214595800 Weak transcription Fetal Kidney kidney
7 chr1:214576800-214612200 Weak transcription Fetal Intestine Large intestine
8 chr1:214577400-214591200 Weak transcription Left Ventricle heart
9 chr1:214578600-214591200 Weak transcription Esophagus oesophagus
10 chr1:214578600-214591400 Weak transcription Fetal Stomach stomach
11 chr1:214578800-214592600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr1:214578800-214592800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr1:214579400-214591200 Weak transcription H1 Cell Line embryonic stem cell
14 chr1:214581400-214601200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:214584200-214591200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:214584200-214592400 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr1:214584200-214603000 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr1:214584400-214591000 Weak transcription Fetal Muscle Leg muscle
19 chr1:214584400-214592200 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr1:214584400-214600000 Weak transcription Fetal Muscle Trunk muscle
21 chr1:214584600-214590800 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr1:214584800-214595800 Weak transcription A549 lung
23 chr1:214585000-214592800 Weak transcription Fetal Lung lung
24 chr1:214585400-214593800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:214587800-214590400 Enhancers HMEC breast
26 chr1:214587800-214591400 Enhancers Breast Myoepithelial Primary Cells Breast
27 chr1:214588000-214590800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:214588000-214592000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr1:214588000-214594000 Enhancers HUVEC blood vessel
30 chr1:214588200-214590400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:214588400-214591200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:214588600-214592600 Weak transcription H9 Cell Line embryonic stem cell
33 chr1:214588600-214593000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:214588800-214591200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:214589000-214590400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr1:214589000-214590400 Enhancers Psoas Muscle Psoas
37 chr1:214589000-214590400 Enhancers Skeletal Muscle Male skeletal muscle
38 chr1:214589000-214590600 Enhancers NH-A brain
39 chr1:214589000-214591000 Enhancers Stomach Smooth Muscle stomach
40 chr1:214589000-214591200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:214589000-214591200 Enhancers NHDF-Ad bronchial
42 chr1:214589000-214593600 Enhancers Rectal Smooth Muscle rectum
43 chr1:214589200-214591000 Weak transcription Right Atrium heart
44 chr1:214589200-214591200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:214589200-214591200 Weak transcription Pancreas Pancrea
46 chr1:214589200-214591400 Enhancers HSMM muscle
47 chr1:214589200-214592000 Weak transcription iPS-20b Cell Line embryonic stem cell
48 chr1:214589400-214590400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr1:214589400-214590400 Enhancers Skeletal Muscle Female skeletal muscle
50 chr1:214589400-214591000 Weak transcription HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015