Variant report

Variant	rs6540829
Chromosome Location	chr1:214596130-214596131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214596071..214597842-chr1:214611517..214614128,2	K562	blood:
2	chr1:214553139..214554826-chr1:214593747..214596716,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17022827	0.85[YRI][hapmap]
rs17022842	0.82[AFR][1000 genomes]
rs17022846	0.82[AFR][1000 genomes]
rs17022851	0.85[YRI][hapmap]
rs17022853	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17022856	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17022857	0.88[AFR][1000 genomes]
rs17022858	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17022860	0.88[AFR][1000 genomes]
rs17022862	1.00[AFR][1000 genomes]
rs17022865	1.00[AFR][1000 genomes]
rs17022866	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17022867	1.00[AFR][1000 genomes]
rs17022869	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17022870	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17022874	1.00[AFR][1000 genomes]
rs17022875	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17022877	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17022878	0.94[AFR][1000 genomes]
rs17022887	1.00[AFR][1000 genomes]
rs17022889	0.94[AFR][1000 genomes]
rs17022892	1.00[AFR][1000 genomes]
rs17732074	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs17788099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17788255	1.00[ASN][1000 genomes]
rs17788590	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs17789069	1.00[CEU][hapmap]
rs35129129	0.84[AFR][1000 genomes]
rs61819565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819566	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819570	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819572	0.84[EUR][1000 genomes]
rs61819573	0.84[EUR][1000 genomes]
rs6700793	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6702991	1.00[AFR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214572600-214612600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:214576800-214612200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:214581400-214601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:214584200-214603000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:214584400-214600000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:214591400-214612800	Weak transcription	Pancreas	Pancrea
7	chr1:214591600-214596200	Enhancers	NHEK	skin
8	chr1:214591600-214596400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:214591600-214598400	Weak transcription	Adipose Nuclei	Adipose
10	chr1:214591600-214600400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:214591600-214601200	Weak transcription	Gastric	stomach
12	chr1:214591600-214601400	Weak transcription	Lung	lung
13	chr1:214592000-214600200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:214592000-214602200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:214593000-214598400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:214593200-214613000	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:214593400-214602400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:214593400-214612800	Weak transcription	Ovary	ovary
19	chr1:214593600-214596200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:214593600-214596400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:214593800-214598600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:214594000-214596400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:214594000-214598400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:214594000-214618000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:214594200-214596800	Enhancers	NHLF	lung
26	chr1:214594400-214596800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:214594400-214598600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:214594600-214596200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:214594800-214597200	Enhancers	Placenta Amnion	Placenta Amnion
30	chr1:214595000-214596400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:214595000-214596800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:214595000-214596800	Enhancers	HSMMtube	muscle
33	chr1:214595000-214597000	Enhancers	HSMM	muscle
34	chr1:214595200-214596200	Flanking Active TSS	Osteobl	bone
35	chr1:214595200-214596800	Enhancers	Left Ventricle	heart
36	chr1:214595200-214597000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:214595400-214596400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr1:214595400-214596400	Weak transcription	Psoas Muscle	Psoas
39	chr1:214595400-214596800	Enhancers	HUVEC	blood vessel
40	chr1:214595400-214601200	Weak transcription	Esophagus	oesophagus
41	chr1:214595400-214602400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr1:214595400-214612800	Weak transcription	Aorta	Aorta
43	chr1:214595600-214596200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr1:214595600-214596400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:214595600-214596600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr1:214595600-214596800	Enhancers	H9 Cell Line	embryonic stem cell
47	chr1:214595800-214596400	Enhancers	A549	lung
48	chr1:214595800-214596600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr1:214595800-214596600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr1:214595800-214596600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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