Variant report

Variant	rs17022877
Chromosome Location	chr1:214589806-214589807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214588411..214590174-chr1:214626017..214628280,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17022827	1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap]
rs17022839	1.00[AMR][1000 genomes]
rs17022842	1.00[AMR][1000 genomes]
rs17022846	1.00[AMR][1000 genomes]
rs17022851	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17022853	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022856	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022857	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022858	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022860	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022862	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022866	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022867	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022869	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022870	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022874	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022875	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022887	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022889	0.89[AFR][1000 genomes]
rs17022892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17732074	1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs17788590	1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs61819565	0.94[AFR][1000 genomes]
rs61819570	0.94[AFR][1000 genomes]
rs6540829	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6700793	1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6702991	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214560000-214592000	Weak transcription	Hela-S3	cervix
2	chr1:214572600-214612600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:214573800-214591000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:214575200-214591200	Weak transcription	Ovary	ovary
5	chr1:214575200-214592000	Weak transcription	Placenta	Placenta
6	chr1:214575200-214595800	Weak transcription	Fetal Kidney	kidney
7	chr1:214576800-214612200	Weak transcription	Fetal Intestine Large	intestine
8	chr1:214577400-214591200	Weak transcription	Left Ventricle	heart
9	chr1:214578600-214591200	Weak transcription	Esophagus	oesophagus
10	chr1:214578600-214591400	Weak transcription	Fetal Stomach	stomach
11	chr1:214578800-214592600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:214578800-214592800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:214579400-214591200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:214581400-214601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:214584200-214591200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:214584200-214592400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:214584200-214603000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:214584400-214591000	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:214584400-214592200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:214584400-214600000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:214584600-214590800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:214584800-214595800	Weak transcription	A549	lung
23	chr1:214585000-214592800	Weak transcription	Fetal Lung	lung
24	chr1:214585400-214590200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:214585400-214593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:214587800-214590400	Enhancers	HMEC	breast
27	chr1:214587800-214591400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr1:214588000-214590800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:214588000-214592000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:214588000-214594000	Enhancers	HUVEC	blood vessel
31	chr1:214588200-214590000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:214588200-214590400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:214588400-214591200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:214588600-214592600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr1:214588600-214593000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:214588800-214590200	Enhancers	Aorta	Aorta
37	chr1:214588800-214591200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr1:214589000-214590000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:214589000-214590000	Enhancers	Right Ventricle	heart
40	chr1:214589000-214590200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:214589000-214590200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr1:214589000-214590400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr1:214589000-214590400	Enhancers	Psoas Muscle	Psoas
44	chr1:214589000-214590400	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr1:214589000-214590600	Enhancers	NH-A	brain
46	chr1:214589000-214591000	Enhancers	Stomach Smooth Muscle	stomach
47	chr1:214589000-214591200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:214589000-214591200	Enhancers	NHDF-Ad	bronchial
49	chr1:214589000-214593600	Enhancers	Rectal Smooth Muscle	rectum
50	chr1:214589200-214590000	Weak transcription	Dnd41	blood

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