Variant report

Variant	rs6700793
Chromosome Location	chr1:214591028-214591029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214585932..214587783-chr1:214590403..214592680,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17022827	1.00[LWK][hapmap];0.94[MKK][hapmap];0.85[YRI][hapmap]
rs17022839	1.00[AMR][1000 genomes]
rs17022842	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022846	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022851	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17022853	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022856	1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022857	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022858	1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022860	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022866	1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022869	1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022870	1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022875	1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022877	1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022878	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022889	0.94[AFR][1000 genomes]
rs17022892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17732074	1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs17788590	1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs35129129	0.84[AFR][1000 genomes]
rs61819565	1.00[AFR][1000 genomes]
rs61819570	1.00[AFR][1000 genomes]
rs6540829	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6702991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214560000-214592000	Weak transcription	Hela-S3	cervix
2	chr1:214572600-214612600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:214575200-214591200	Weak transcription	Ovary	ovary
4	chr1:214575200-214592000	Weak transcription	Placenta	Placenta
5	chr1:214575200-214595800	Weak transcription	Fetal Kidney	kidney
6	chr1:214576800-214612200	Weak transcription	Fetal Intestine Large	intestine
7	chr1:214577400-214591200	Weak transcription	Left Ventricle	heart
8	chr1:214578600-214591200	Weak transcription	Esophagus	oesophagus
9	chr1:214578600-214591400	Weak transcription	Fetal Stomach	stomach
10	chr1:214578800-214592600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:214578800-214592800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:214579400-214591200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:214581400-214601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:214584200-214591200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:214584200-214592400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:214584200-214603000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:214584400-214592200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:214584400-214600000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr1:214584800-214595800	Weak transcription	A549	lung
20	chr1:214585000-214592800	Weak transcription	Fetal Lung	lung
21	chr1:214585400-214593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:214587800-214591400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr1:214588000-214592000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:214588000-214594000	Enhancers	HUVEC	blood vessel
25	chr1:214588400-214591200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:214588600-214592600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr1:214588600-214593000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:214588800-214591200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:214589000-214591200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:214589000-214591200	Enhancers	NHDF-Ad	bronchial
31	chr1:214589000-214593600	Enhancers	Rectal Smooth Muscle	rectum
32	chr1:214589200-214591200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:214589200-214591200	Weak transcription	Pancreas	Pancrea
34	chr1:214589200-214591400	Enhancers	HSMM	muscle
35	chr1:214589200-214592000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:214589400-214591600	Enhancers	Adipose Nuclei	Adipose
37	chr1:214589400-214592400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr1:214589400-214593800	Enhancers	Colon Smooth Muscle	Colon
39	chr1:214589800-214592000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:214590000-214591200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:214590000-214591200	Weak transcription	Right Ventricle	heart
42	chr1:214590000-214592600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr1:214590000-214592800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr1:214590200-214591200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr1:214590200-214591200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:214590200-214591200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:214590200-214591400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:214590200-214592400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:214590400-214591200	Weak transcription	NHLF	lung
50	chr1:214590400-214591400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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