The 2.0 version of rSNPBase

Variant report

Variant rs17022842
Chromosome Location chr1:214587442-214587443
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214557800-214589000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:214560000-214592000 Weak transcription Hela-S3 cervix
3 chr1:214567000-214587600 Weak transcription HepG2 liver
4 chr1:214572600-214612600 Weak transcription Fetal Intestine Small intestine
5 chr1:214573800-214591000 Weak transcription Placenta Amnion Placenta Amnion
6 chr1:214574600-214588200 Weak transcription Aorta Aorta
7 chr1:214575000-214589400 Weak transcription Colon Smooth Muscle Colon
8 chr1:214575200-214589000 Weak transcription Stomach Smooth Muscle stomach
9 chr1:214575200-214591200 Weak transcription Ovary ovary
10 chr1:214575200-214592000 Weak transcription Placenta Placenta
11 chr1:214575200-214595800 Weak transcription Fetal Kidney kidney
12 chr1:214576800-214589000 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:214576800-214612200 Weak transcription Fetal Intestine Large intestine
14 chr1:214577000-214589400 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:214577400-214589000 Weak transcription Psoas Muscle Psoas
16 chr1:214577400-214591200 Weak transcription Left Ventricle heart
17 chr1:214578600-214589000 Weak transcription Right Ventricle heart
18 chr1:214578600-214591200 Weak transcription Esophagus oesophagus
19 chr1:214578600-214591400 Weak transcription Fetal Stomach stomach
20 chr1:214578800-214588200 Weak transcription H9 Cell Line embryonic stem cell
21 chr1:214578800-214589400 Weak transcription NHLF lung
22 chr1:214578800-214592600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr1:214578800-214592800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr1:214579000-214588800 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr1:214579000-214589400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:214579400-214591200 Weak transcription H1 Cell Line embryonic stem cell
27 chr1:214580400-214588000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:214581400-214601200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr1:214582000-214588800 Strong transcription Osteobl bone
30 chr1:214584200-214588800 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr1:214584200-214589000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr1:214584200-214589400 Weak transcription HSMMtube muscle
33 chr1:214584200-214591200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr1:214584200-214592400 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr1:214584200-214603000 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr1:214584400-214587600 Weak transcription NH-A brain
37 chr1:214584400-214589000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr1:214584400-214589400 Weak transcription Adipose Nuclei Adipose
39 chr1:214584400-214591000 Weak transcription Fetal Muscle Leg muscle
40 chr1:214584400-214592200 Weak transcription HUES48 Cell Line embryonic stem cell
41 chr1:214584400-214600000 Weak transcription Fetal Muscle Trunk muscle
42 chr1:214584600-214588200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr1:214584600-214588800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr1:214584600-214590800 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr1:214584800-214589000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:214584800-214595800 Weak transcription A549 lung
47 chr1:214585000-214592800 Weak transcription Fetal Lung lung
48 chr1:214585200-214587800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:214585400-214590200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr1:214585400-214593800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015