Variant report

Variant	rs17022858
Chromosome Location	chr1:214588302-214588303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17022827	1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap]
rs17022839	1.00[AMR][1000 genomes]
rs17022842	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022851	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022853	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022856	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022862	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022865	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022866	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022867	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022869	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022870	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022874	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022875	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022877	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022878	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022887	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022889	0.83[AFR][1000 genomes]
rs17022892	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17732074	1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs17788590	1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs61819565	0.88[AFR][1000 genomes]
rs61819570	0.88[AFR][1000 genomes]
rs6540829	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6700793	1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6702991	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214557800-214589000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:214560000-214592000	Weak transcription	Hela-S3	cervix
3	chr1:214572600-214612600	Weak transcription	Fetal Intestine Small	intestine
4	chr1:214573800-214591000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:214575000-214589400	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:214575200-214589000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:214575200-214591200	Weak transcription	Ovary	ovary
8	chr1:214575200-214592000	Weak transcription	Placenta	Placenta
9	chr1:214575200-214595800	Weak transcription	Fetal Kidney	kidney
10	chr1:214576800-214589000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:214576800-214612200	Weak transcription	Fetal Intestine Large	intestine
12	chr1:214577000-214589400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:214577400-214589000	Weak transcription	Psoas Muscle	Psoas
14	chr1:214577400-214591200	Weak transcription	Left Ventricle	heart
15	chr1:214578600-214589000	Weak transcription	Right Ventricle	heart
16	chr1:214578600-214591200	Weak transcription	Esophagus	oesophagus
17	chr1:214578600-214591400	Weak transcription	Fetal Stomach	stomach
18	chr1:214578800-214589400	Weak transcription	NHLF	lung
19	chr1:214578800-214592600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:214578800-214592800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:214579000-214588800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:214579000-214589400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:214579400-214591200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr1:214581400-214601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:214582000-214588800	Strong transcription	Osteobl	bone
26	chr1:214584200-214588800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr1:214584200-214589000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:214584200-214589400	Weak transcription	HSMMtube	muscle
29	chr1:214584200-214591200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:214584200-214592400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:214584200-214603000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:214584400-214589000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:214584400-214589400	Weak transcription	Adipose Nuclei	Adipose
34	chr1:214584400-214591000	Weak transcription	Fetal Muscle Leg	muscle
35	chr1:214584400-214592200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:214584400-214600000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr1:214584600-214588800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:214584600-214590800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:214584800-214589000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:214584800-214595800	Weak transcription	A549	lung
41	chr1:214585000-214592800	Weak transcription	Fetal Lung	lung
42	chr1:214585400-214590200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr1:214585400-214593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:214585600-214589000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr1:214585600-214589000	Weak transcription	NHDF-Ad	bronchial
46	chr1:214586200-214589200	Weak transcription	HSMM	muscle
47	chr1:214586400-214589000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:214586600-214588400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:214587400-214588400	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr1:214587400-214589200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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