Variant report

Variant	rs17789069
Chromosome Location	chr1:214614585-214614586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214611152..214615489-chr1:214618364..214620847,4	MCF-7	breast:
2	chr1:214614481..214615989-chr1:214619724..214621377,2	MCF-7	breast:
3	chr1:214613502..214615367-chr4:18740993..18743992,2	MCF-7	breast:
4	chr1:214612014..214614928-chr1:214618939..214621537,2	K562	blood:

rs_ID	r²[population]
rs17788099	1.00[CEU][hapmap]
rs61819593	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61819598	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61819615	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61819619	0.82[EUR][1000 genomes]
rs61819626	0.82[EUR][1000 genomes]
rs61819647	0.81[EUR][1000 genomes]
rs6540829	1.00[CEU][hapmap]

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214594000-214618000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:214601600-214625200	Weak transcription	Esophagus	oesophagus
3	chr1:214601600-214633000	Weak transcription	Gastric	stomach
4	chr1:214602800-214617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:214604000-214617600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:214610400-214615800	Enhancers	HUVEC	blood vessel
7	chr1:214610400-214620600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:214610600-214617000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:214611200-214615400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:214611400-214615000	Enhancers	Fetal Thymus	thymus
11	chr1:214611600-214615800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:214611600-214616200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr1:214611600-214616200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:214611600-214619200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:214611600-214620400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:214611800-214618000	Weak transcription	Right Atrium	heart
17	chr1:214611800-214620400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:214611800-214623200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:214612200-214616000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr1:214612400-214614800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:214612600-214615200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:214612600-214615200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr1:214612800-214614600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:214612800-214614800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr1:214612800-214615200	Enhancers	H9 Cell Line	embryonic stem cell
26	chr1:214612800-214615400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr1:214612800-214615400	Enhancers	Dnd41	blood
28	chr1:214612800-214616800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:214613000-214614600	Enhancers	Stomach Mucosa	stomach
30	chr1:214613000-214614800	Enhancers	Colon Smooth Muscle	Colon
31	chr1:214613000-214615000	Enhancers	Thymus	Thymus
32	chr1:214613000-214615000	Enhancers	NHLF	lung
33	chr1:214613000-214619800	Weak transcription	Fetal Brain Male	brain
34	chr1:214613000-214649400	Weak transcription	Lung	lung
35	chr1:214613200-214614800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:214613200-214614800	Enhancers	Primary T cells from cord blood	blood
37	chr1:214613200-214614800	Enhancers	Fetal Heart	heart
38	chr1:214613200-214614800	Enhancers	Rectal Smooth Muscle	rectum
39	chr1:214613200-214615600	Genic enhancers	Osteobl	bone
40	chr1:214613200-214616800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:214613200-214617600	Weak transcription	Fetal Stomach	stomach
42	chr1:214613200-214617800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:214613200-214618400	Weak transcription	Left Ventricle	heart
44	chr1:214613200-214620600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr1:214613200-214620600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr1:214613200-214628400	Weak transcription	Ovary	ovary
47	chr1:214613200-214633400	Weak transcription	Pancreas	Pancrea
48	chr1:214613400-214614600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr1:214613400-214614600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:214613400-214614600	Enhancers	Aorta	Aorta

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