Variant report

Variant	rs61819598
Chromosome Location	chr1:214627674-214627675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214588411..214590174-chr1:214626017..214628280,2	MCF-7	breast:
2	chr1:214610565..214613807-chr1:214625696..214628799,3	K562	blood:
3	chr1:214622847..214626108-chr1:214626290..214628775,3	MCF-7	breast:

rs_ID	r²[population]
rs17789069	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17790652	0.82[EUR][1000 genomes]
rs61819593	1.00[AMR][1000 genomes]
rs61819615	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61819619	0.88[EUR][1000 genomes]
rs61819626	0.88[EUR][1000 genomes]
rs61819634	0.86[EUR][1000 genomes]
rs61819639	0.86[EUR][1000 genomes]
rs61819647	0.87[EUR][1000 genomes]

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214601600-214633000	Weak transcription	Gastric	stomach
2	chr1:214613000-214649400	Weak transcription	Lung	lung
3	chr1:214613200-214628400	Weak transcription	Ovary	ovary
4	chr1:214613200-214633400	Weak transcription	Pancreas	Pancrea
5	chr1:214618800-214627800	Weak transcription	Fetal Heart	heart
6	chr1:214618800-214628000	Weak transcription	Aorta	Aorta
7	chr1:214618800-214628000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:214618800-214628200	Weak transcription	Right Ventricle	heart
9	chr1:214619400-214628400	Weak transcription	Thymus	Thymus
10	chr1:214620000-214637400	Weak transcription	Fetal Brain Male	brain
11	chr1:214620600-214628200	Weak transcription	Fetal Thymus	thymus
12	chr1:214620800-214636800	Weak transcription	Adipose Nuclei	Adipose
13	chr1:214620800-214637800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:214621000-214628200	Weak transcription	Placenta	Placenta
15	chr1:214621000-214639800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:214621200-214633400	Weak transcription	Fetal Kidney	kidney
17	chr1:214621200-214633600	Weak transcription	Fetal Intestine Small	intestine
18	chr1:214621400-214633400	Weak transcription	HepG2	liver
19	chr1:214621600-214633600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:214622200-214627800	Weak transcription	Hela-S3	cervix
21	chr1:214624000-214634600	Weak transcription	Fetal Stomach	stomach
22	chr1:214624200-214630200	Enhancers	NHDF-Ad	bronchial
23	chr1:214624600-214628400	Enhancers	HMEC	breast
24	chr1:214624600-214633800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:214624800-214628600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:214624800-214630200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:214625000-214627800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:214625000-214631200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:214625200-214630000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:214625400-214628000	Weak transcription	Colon Smooth Muscle	Colon
31	chr1:214625400-214628000	Enhancers	A549	lung
32	chr1:214625400-214629200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr1:214625400-214629400	Enhancers	NHLF	lung
34	chr1:214625400-214630200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr1:214625600-214629200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:214625800-214627800	Weak transcription	HSMMtube	muscle
37	chr1:214625800-214628200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:214625800-214629200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:214625800-214629200	Enhancers	HSMM	muscle
40	chr1:214625800-214633400	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr1:214625800-214636800	Weak transcription	Esophagus	oesophagus
42	chr1:214625800-214644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr1:214626000-214627800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr1:214626000-214633200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:214626200-214628800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr1:214626200-214630400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:214626200-214631000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:214626600-214629200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:214626600-214630200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr1:214626800-214627800	Weak transcription	Psoas Muscle	Psoas

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