Variant report

Variant	rs61819615
Chromosome Location	chr1:214642887-214642888
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr1:214642791-214642888	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr1:214642635-214642961	SK-N-MC	brain:	n/a	n/a
3	NFIC	chr1:214642555-214643060	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214640599..214643546-chr1:214723223..214725021,2	MCF-7	breast:
2	chr1:214640762..214643039-chr1:214644769..214647114,2	MCF-7	breast:

Variant related genes	Relation type
PTPN14	TF binding region
ENSG00000152104	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17789069	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17790652	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61819593	0.91[AMR][1000 genomes]
rs61819598	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61819619	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61819626	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61819634	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61819639	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61819643	0.82[AMR][1000 genomes]
rs61819645	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61819647	0.90[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214613000-214649400	Weak transcription	Lung	lung
2	chr1:214625800-214644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:214629200-214644800	Weak transcription	Psoas Muscle	Psoas
4	chr1:214634400-214644400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:214634400-214645000	Weak transcription	HUVEC	blood vessel
6	chr1:214634400-214646200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:214635800-214645000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:214637200-214645000	Weak transcription	Esophagus	oesophagus
9	chr1:214638200-214644400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:214638200-214644400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:214638200-214645400	Weak transcription	Left Ventricle	heart
12	chr1:214638200-214645600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:214638200-214645800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:214638200-214647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:214638200-214649200	Weak transcription	Aorta	Aorta
16	chr1:214638400-214644600	Weak transcription	HSMM	muscle
17	chr1:214638400-214649000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:214638400-214649400	Weak transcription	Right Ventricle	heart
19	chr1:214638600-214646800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:214639800-214643000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:214640200-214644800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:214640200-214646600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:214640200-214647400	Weak transcription	Fetal Kidney	kidney
24	chr1:214640200-214649400	Weak transcription	Placenta	Placenta
25	chr1:214640200-214650000	Weak transcription	Fetal Lung	lung
26	chr1:214640400-214643200	Weak transcription	Small Intestine	intestine
27	chr1:214640400-214644800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr1:214640400-214644800	Weak transcription	Stomach Mucosa	stomach
29	chr1:214640400-214645000	Weak transcription	Adipose Nuclei	Adipose
30	chr1:214640400-214649400	Weak transcription	Pancreas	Pancrea
31	chr1:214640800-214644600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr1:214640800-214644600	Weak transcription	Fetal Intestine Large	intestine
33	chr1:214640800-214644600	Weak transcription	Fetal Intestine Small	intestine
34	chr1:214640800-214644800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:214640800-214644800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:214640800-214644800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:214640800-214644800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr1:214640800-214645000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr1:214640800-214645200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:214640800-214645400	Weak transcription	HSMMtube	muscle
41	chr1:214640800-214645600	Weak transcription	NHLF	lung
42	chr1:214640800-214645800	Weak transcription	NH-A	brain
43	chr1:214640800-214645800	Weak transcription	NHDF-Ad	bronchial
44	chr1:214640800-214648000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr1:214640800-214649000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:214640800-214649400	Weak transcription	Ovary	ovary
47	chr1:214640800-214649400	Weak transcription	Right Atrium	heart
48	chr1:214640800-214649600	Weak transcription	Fetal Muscle Leg	muscle
49	chr1:214640800-214650200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr1:214641000-214644600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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