Variant report

Variant	rs61819634
Chromosome Location	chr1:214648484-214648485
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214648053..214650360-chr1:214683258..214686104,2	MCF-7	breast:
2	chr1:214647353..214649494-chr1:214677849..214679754,2	MCF-7	breast:
3	chr1:214648282..214650970-chr1:214652093..214654232,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17790652	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61819593	0.89[EUR][1000 genomes]
rs61819598	0.86[EUR][1000 genomes]
rs61819615	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61819619	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61819626	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61819639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61819643	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61819645	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61819646	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61819647	0.91[AMR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214613000-214649400	Weak transcription	Lung	lung
2	chr1:214638200-214649200	Weak transcription	Aorta	Aorta
3	chr1:214638400-214649000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:214638400-214649400	Weak transcription	Right Ventricle	heart
5	chr1:214640200-214649400	Weak transcription	Placenta	Placenta
6	chr1:214640200-214650000	Weak transcription	Fetal Lung	lung
7	chr1:214640400-214649400	Weak transcription	Pancreas	Pancrea
8	chr1:214640800-214649000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:214640800-214649400	Weak transcription	Ovary	ovary
10	chr1:214640800-214649400	Weak transcription	Right Atrium	heart
11	chr1:214640800-214649600	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:214640800-214650200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:214641400-214667800	Weak transcription	Hela-S3	cervix
14	chr1:214644400-214650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr1:214644600-214649400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:214644600-214649600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr1:214644600-214651400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr1:214644800-214649000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:214644800-214650600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:214644800-214651000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:214645000-214648600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:214645000-214651800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:214645200-214656600	Weak transcription	Fetal Intestine Large	intestine
24	chr1:214645400-214648800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:214645600-214649000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:214645800-214648800	Weak transcription	Esophagus	oesophagus
27	chr1:214645800-214648800	Enhancers	NHEK	skin
28	chr1:214645800-214649000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:214645800-214649200	Enhancers	NH-A	brain
30	chr1:214645800-214649400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:214645800-214649400	Weak transcription	Left Ventricle	heart
32	chr1:214645800-214649600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr1:214645800-214666000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr1:214646000-214672200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:214646200-214650600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr1:214646200-214651000	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr1:214646200-214651800	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr1:214647000-214649400	Enhancers	HUVEC	blood vessel
39	chr1:214647200-214649600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:214647200-214649800	Weak transcription	NHLF	lung
41	chr1:214647200-214661600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr1:214647400-214650000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:214647400-214650200	Enhancers	H9 Cell Line	embryonic stem cell
44	chr1:214647400-214651200	Enhancers	Psoas Muscle	Psoas
45	chr1:214647600-214649000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:214647600-214649200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr1:214647600-214649200	Weak transcription	Colon Smooth Muscle	Colon
48	chr1:214647600-214649200	Weak transcription	HSMMtube	muscle
49	chr1:214647600-214649400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:214647600-214650800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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