Variant report

Variant	rs61819566
Chromosome Location	chr1:214592139-214592140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214585932..214587783-chr1:214590403..214592680,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17788099	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17788255	1.00[ASN][1000 genomes]
rs61819565	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819572	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61819573	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6540829	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214572600-214612600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:214575200-214595800	Weak transcription	Fetal Kidney	kidney
3	chr1:214576800-214612200	Weak transcription	Fetal Intestine Large	intestine
4	chr1:214578800-214592600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:214578800-214592800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:214581400-214601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:214584200-214592400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:214584200-214603000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:214584400-214592200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:214584400-214600000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:214584800-214595800	Weak transcription	A549	lung
12	chr1:214585000-214592800	Weak transcription	Fetal Lung	lung
13	chr1:214585400-214593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:214588000-214594000	Enhancers	HUVEC	blood vessel
15	chr1:214588600-214592600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:214588600-214593000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:214589000-214593600	Enhancers	Rectal Smooth Muscle	rectum
18	chr1:214589400-214592400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:214589400-214593800	Enhancers	Colon Smooth Muscle	Colon
20	chr1:214590000-214592600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:214590000-214592800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr1:214590200-214592400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:214590400-214595600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:214590600-214593000	Enhancers	Aorta	Aorta
25	chr1:214590800-214593400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:214590800-214593400	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr1:214590800-214594200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr1:214590800-214594200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr1:214590800-214595800	Enhancers	HMEC	breast
30	chr1:214591000-214592200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:214591000-214592800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr1:214591000-214593400	Enhancers	HSMMtube	muscle
33	chr1:214591000-214594000	Enhancers	Fetal Heart	heart
34	chr1:214591000-214594000	Enhancers	NH-A	brain
35	chr1:214591000-214594400	Enhancers	Placenta Amnion	Placenta Amnion
36	chr1:214591200-214592200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:214591200-214592400	Flanking Active TSS	NHDF-Ad	bronchial
38	chr1:214591200-214593600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr1:214591400-214592200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:214591400-214592200	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr1:214591400-214593000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:214591400-214594000	Enhancers	Stomach Smooth Muscle	stomach
43	chr1:214591400-214612800	Weak transcription	Pancreas	Pancrea
44	chr1:214591600-214592600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr1:214591600-214592600	Weak transcription	Fetal Muscle Leg	muscle
46	chr1:214591600-214593000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:214591600-214593400	Enhancers	HSMM	muscle
48	chr1:214591600-214595000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:214591600-214596200	Enhancers	NHEK	skin
50	chr1:214591600-214596400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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