Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12290125	1.00[MEX][hapmap]
rs17720513	1.00[CEU][hapmap]
rs17721184	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17721739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17794213	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs211126	0.82[EUR][1000 genomes]
rs211127	0.82[EUR][1000 genomes]
rs211134	1.00[CEU][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap]
rs2237912	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2237921	1.00[MEX][hapmap]
rs2283236	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2283239	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs34614478	0.82[EUR][1000 genomes]
rs394218	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs3993323	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs3993324	1.00[CEU][hapmap]
rs440234	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs4757605	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs4757615	0.90[CEU][hapmap]
rs61882461	0.82[EUR][1000 genomes]
rs61882465	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61884492	0.82[EUR][1000 genomes]
rs61884493	0.82[EUR][1000 genomes]
rs61884494	0.82[EUR][1000 genomes]
rs72874057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72874061	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs758437	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17794760	COPB1	cis	parietal	SCAN
rs17794760	UEVLD	cis	parietal	SCAN
rs17794760	HPS5	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18042600-18064600	Weak transcription	Aorta	Aorta

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