The 2.0 version of rSNPBase

Variant report

Variant rs17805623
Chromosome Location chr4:74466419-74466420
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:74440200-74472600 Weak transcription Gastric stomach
2 chr4:74449000-74470200 Weak transcription Primary T cells from cord blood blood
3 chr4:74456400-74472200 Weak transcription Colonic Mucosa Colon
4 chr4:74463600-74470400 Enhancers Fetal Intestine Large intestine
5 chr4:74463800-74474200 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr4:74464200-74476400 Enhancers Stomach Mucosa stomach
7 chr4:74464200-74477200 Enhancers Fetal Intestine Small intestine
8 chr4:74464600-74467000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr4:74464800-74466600 Transcr. at gene 5' and 3' Fetal Thymus thymus
10 chr4:74464800-74467800 Enhancers Colon Smooth Muscle Colon
11 chr4:74465000-74475400 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr4:74465200-74468800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr4:74465200-74469000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr4:74465400-74468400 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr4:74465400-74468800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr4:74465400-74468800 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr4:74465400-74469000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr4:74465400-74469000 Weak transcription HSMMtube muscle
19 chr4:74465400-74469000 Weak transcription Osteobl bone
20 chr4:74465400-74469200 Weak transcription Stomach Smooth Muscle stomach
21 chr4:74465400-74469200 Enhancers HepG2 liver
22 chr4:74465400-74469600 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr4:74465400-74483000 Weak transcription Esophagus oesophagus
24 chr4:74465600-74467200 Enhancers Dnd41 blood
25 chr4:74465600-74469000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr4:74465600-74469000 Weak transcription GM12878-XiMat blood
27 chr4:74465600-74469200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr4:74465600-74472200 Weak transcription HMEC breast
29 chr4:74465800-74467600 Weak transcription Pancreas Pancrea
30 chr4:74465800-74468000 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr4:74465800-74469000 Weak transcription Duodenum Mucosa Duodenum
32 chr4:74465800-74471000 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr4:74465800-74471800 Weak transcription Small Intestine intestine
34 chr4:74465800-74472600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr4:74465800-74473000 Weak transcription NHEK skin
36 chr4:74465800-74476000 Weak transcription Placenta Placenta
37 chr4:74466000-74468600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr4:74466000-74469000 Weak transcription Muscle Satellite Cultured Cells --
39 chr4:74466200-74466600 Active TSS Thymus Thymus
40 chr4:74466200-74467800 Genic enhancers Breast Myoepithelial Primary Cells Breast
41 chr4:74466400-74466600 Flanking Active TSS A549 lung
42 chr4:74466400-74467000 Enhancers Rectal Smooth Muscle rectum
43 chr4:74466400-74467200 Enhancers Fetal Lung lung
44 chr4:74466400-74467600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr4:74466400-74469000 Weak transcription HSMM muscle

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Last update: Aug 31, 2015