Variant report

Variant	rs6838329
Chromosome Location	chr4:74410378-74410379
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10011419	0.84[EUR][1000 genomes]
rs10019146	0.84[EUR][1000 genomes]
rs10019320	0.84[EUR][1000 genomes]
rs10020054	0.84[EUR][1000 genomes]
rs10021827	0.84[EUR][1000 genomes]
rs10028196	0.83[EUR][1000 genomes]
rs10028276	0.82[EUR][1000 genomes]
rs10029673	0.84[EUR][1000 genomes]
rs10518115	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1074085	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10805065	0.83[EUR][1000 genomes]
rs10938085	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10938086	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1247668	0.84[EUR][1000 genomes]
rs1247670	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1247671	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12503916	0.84[EUR][1000 genomes]
rs12505842	0.84[EUR][1000 genomes]
rs12506668	0.84[EUR][1000 genomes]
rs12506675	0.84[EUR][1000 genomes]
rs12507775	0.84[EUR][1000 genomes]
rs12508661	0.91[EUR][1000 genomes]
rs12508974	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12510629	0.83[EUR][1000 genomes]
rs13103378	0.83[EUR][1000 genomes]
rs13120998	0.83[EUR][1000 genomes]
rs13133747	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13144296	0.84[EUR][1000 genomes]
rs13144390	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13353732	0.87[ASN][1000 genomes]
rs1358592	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1528915	0.83[EUR][1000 genomes]
rs1528916	0.85[EUR][1000 genomes]
rs1528917	0.85[EUR][1000 genomes]
rs1528918	0.85[EUR][1000 genomes]
rs1528924	0.83[EUR][1000 genomes]
rs1569204	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16849628	0.84[EUR][1000 genomes]
rs16849629	0.84[EUR][1000 genomes]
rs16849651	0.84[EUR][1000 genomes]
rs16849656	0.84[EUR][1000 genomes]
rs16849659	0.84[EUR][1000 genomes]
rs16849675	0.85[EUR][1000 genomes]
rs16849677	0.85[EUR][1000 genomes]
rs17192413	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17805623	0.90[EUR][1000 genomes]
rs1881611	0.90[ASN][1000 genomes]
rs2008288	0.84[EUR][1000 genomes]
rs2178292	0.83[EUR][1000 genomes]
rs2204736	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28407399	0.84[EUR][1000 genomes]
rs28450939	0.84[EUR][1000 genomes]
rs28612539	0.84[EUR][1000 genomes]
rs28658027	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28693538	0.84[EUR][1000 genomes]
rs34123018	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34238679	0.82[EUR][1000 genomes]
rs34773614	0.85[EUR][1000 genomes]
rs34832471	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34859660	0.85[EUR][1000 genomes]
rs35988516	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3756073	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4438732	0.83[EUR][1000 genomes]
rs4694170	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4694173	0.83[EUR][1000 genomes]
rs4694626	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56011127	0.83[EUR][1000 genomes]
rs56384466	0.82[EUR][1000 genomes]
rs6446939	0.81[EUR][1000 genomes]
rs6446941	0.83[EUR][1000 genomes]
rs66501353	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68145475	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72647083	0.82[EUR][1000 genomes]
rs72649103	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649104	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7665563	0.85[EUR][1000 genomes]
rs7665972	0.85[EUR][1000 genomes]
rs7667019	0.85[EUR][1000 genomes]
rs7667185	0.85[EUR][1000 genomes]
rs7674913	0.84[EUR][1000 genomes]
rs7676850	0.84[EUR][1000 genomes]
rs7676870	0.84[EUR][1000 genomes]
rs7676884	0.84[EUR][1000 genomes]
rs7682201	0.84[EUR][1000 genomes]
rs7687216	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7695792	0.85[EUR][1000 genomes]
rs7695946	0.85[EUR][1000 genomes]
rs7696502	0.84[EUR][1000 genomes]
rs9990707	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9999939	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3370533	chr4:74407613-74410861	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3440939	chr4:74407838-74410686	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74409800-74410400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:74409800-74410800	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links