Variant report

Variant	rs4694626
Chromosome Location	chr4:74494008-74494009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10011419	0.81[EUR][1000 genomes]
rs10019146	0.81[EUR][1000 genomes]
rs10019320	0.81[EUR][1000 genomes]
rs10020054	0.81[EUR][1000 genomes]
rs10021827	0.81[EUR][1000 genomes]
rs10029673	0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs10518115	1.00[ASW][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes]
rs1074085	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1247593	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247651	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1247668	0.81[EUR][1000 genomes]
rs1247670	0.83[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1247671	0.83[JPT][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12503916	0.81[EUR][1000 genomes]
rs12505842	0.80[EUR][1000 genomes]
rs12506668	0.80[EUR][1000 genomes]
rs12506675	0.80[EUR][1000 genomes]
rs12507775	0.81[EUR][1000 genomes]
rs12508661	0.83[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs13133747	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13144296	0.81[EUR][1000 genomes]
rs13144390	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358592	1.00[ASW][hapmap];0.88[TSI][hapmap]
rs1528916	0.82[EUR][1000 genomes]
rs1528917	0.82[EUR][1000 genomes]
rs1528918	0.82[EUR][1000 genomes]
rs16849628	0.81[EUR][1000 genomes]
rs16849629	0.81[EUR][1000 genomes]
rs16849651	0.81[EUR][1000 genomes]
rs16849656	0.81[EUR][1000 genomes]
rs16849659	0.81[EUR][1000 genomes]
rs16849675	0.82[EUR][1000 genomes]
rs16849677	0.82[EUR][1000 genomes]
rs17192413	0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17805623	0.91[EUR][1000 genomes]
rs2008288	0.81[EUR][1000 genomes]
rs28407399	0.81[EUR][1000 genomes]
rs28450939	0.81[EUR][1000 genomes]
rs28612539	0.81[EUR][1000 genomes]
rs28658027	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28693538	0.81[EUR][1000 genomes]
rs34123018	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34773614	0.82[EUR][1000 genomes]
rs34832471	0.80[AMR][1000 genomes]
rs34859660	0.82[EUR][1000 genomes]
rs4694170	1.00[ASW][hapmap];0.88[TSI][hapmap]
rs68145475	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6838329	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72649103	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7665563	0.82[EUR][1000 genomes]
rs7665972	0.82[EUR][1000 genomes]
rs7667019	0.82[EUR][1000 genomes]
rs7667185	0.82[EUR][1000 genomes]
rs7674913	0.80[EUR][1000 genomes]
rs7676850	0.80[EUR][1000 genomes]
rs7676870	0.80[EUR][1000 genomes]
rs7676884	0.80[EUR][1000 genomes]
rs7682201	0.81[EUR][1000 genomes]
rs7695792	0.82[EUR][1000 genomes]
rs7695946	0.82[EUR][1000 genomes]
rs7696502	0.81[EUR][1000 genomes]
rs9997572	0.80[ASN][1000 genomes]
rs9999939	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74486200-74497200	Weak transcription	Gastric	stomach
2	chr4:74488000-74495600	Weak transcription	Fetal Lung	lung
3	chr4:74491200-74495800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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