Variant report

Variant	rs17806210
Chromosome Location	chr2:141332832-141332833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141323740..141325865-chr2:141332665..141335542,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10169432	0.88[JPT][hapmap]
rs10171840	0.85[JPT][hapmap]
rs10188125	0.81[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10496846	0.85[JPT][hapmap]
rs10496848	0.85[JPT][hapmap]
rs10928755	0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10928756	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11695464	0.82[ASN][1000 genomes]
rs12464264	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12615001	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs12619328	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs12620866	0.82[ASN][1000 genomes]
rs12622824	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs12623376	0.85[JPT][hapmap]
rs12692059	0.82[ASN][1000 genomes]
rs13003116	0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs13383771	0.82[ASN][1000 genomes]
rs1352045	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1385768	0.85[JPT][hapmap]
rs1463616	0.85[JPT][hapmap]
rs1485847	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1485848	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs1485849	0.85[JPT][hapmap]
rs1905921	0.85[JPT][hapmap]
rs2380887	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3793154	0.82[ASN][1000 genomes]
rs3828939	0.85[JPT][hapmap]
rs3828941	0.85[JPT][hapmap]
rs59559230	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6430913	0.85[JPT][hapmap]
rs6430914	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs6430918	0.85[JPT][hapmap]
rs6430920	0.85[JPT][hapmap]
rs6430921	0.85[JPT][hapmap]
rs6723267	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6723595	0.80[ASN][1000 genomes]
rs6732761	0.92[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs6734931	0.80[ASN][1000 genomes]
rs6735284	0.80[ASN][1000 genomes]
rs6738341	0.80[ASN][1000 genomes]
rs6738395	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs6741670	0.85[JPT][hapmap]
rs6751143	0.87[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs7569306	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs7581067	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs9287535	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs936835	0.88[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583192	chr2:141310721-141350100	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a
2	nsv459529	chr2:141321160-141350100	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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