Variant report

Variant	rs936835
Chromosome Location	chr2:141313351-141313352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10169432	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs10171840	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs10188125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10496846	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs10496848	0.86[CHB][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap]
rs10928755	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11693520	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs11695464	0.88[ASN][1000 genomes]
rs12615001	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12619328	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs12620866	0.88[ASN][1000 genomes]
rs12622824	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12623376	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs12692059	0.88[ASN][1000 genomes]
rs13003116	1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs13383771	0.88[ASN][1000 genomes]
rs1385768	0.86[CHB][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap]
rs1463616	0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap]
rs1485847	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1485848	1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1485849	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs17806210	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs1905921	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1905925	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs2380887	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs3793154	0.88[ASN][1000 genomes]
rs3828939	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs3828941	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6430913	0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap]
rs6430914	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6430918	0.85[CHB][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap]
rs6430920	0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap]
rs6430921	0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap]
rs6723267	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs6723595	0.86[ASN][1000 genomes]
rs6734931	0.86[ASN][1000 genomes]
rs6735284	0.86[ASN][1000 genomes]
rs6738341	0.86[ASN][1000 genomes]
rs6738395	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6741670	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6751143	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7567592	0.83[ASN][1000 genomes]
rs7569306	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7581067	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs9287535	0.95[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583192	chr2:141310721-141350100	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs936835	FSHB	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141312600-141314000	Enhancers	Liver	Liver

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