Variant report

Variant	rs11693520
Chromosome Location	chr2:141287317-141287318
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10169432	0.92[CEU][hapmap]
rs10171840	0.85[CEU][hapmap]
rs10188125	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10190721	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10198931	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10496846	0.85[CEU][hapmap]
rs10496848	0.85[CEU][hapmap];0.88[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs10496849	0.87[MEX][hapmap]
rs10928755	0.89[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11688310	0.88[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11695464	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12615001	0.89[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12619328	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12620866	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12622792	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12622824	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12623376	0.85[CEU][hapmap]
rs12692059	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13002524	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13003116	0.89[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13006464	0.87[MEX][hapmap]
rs13013854	0.96[MEX][hapmap]
rs13383771	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13404711	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1385768	0.89[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1463616	0.85[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap]
rs1485847	0.84[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1485848	0.89[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1485849	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1905921	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs1905923	0.82[AMR][1000 genomes]
rs1905925	0.89[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3793154	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3828939	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3828940	0.80[AMR][1000 genomes]
rs3828941	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6430913	0.89[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6430914	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs6430918	0.81[CEU][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs6430920	0.85[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs6430921	0.85[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs6723595	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6729619	0.85[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6732761	0.90[CHD][hapmap];0.81[JPT][hapmap]
rs6734931	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6735284	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6738341	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6738395	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs6741670	0.88[CEU][hapmap]
rs6751143	0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7559877	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7569306	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs7571856	0.81[AMR][1000 genomes]
rs7581067	0.83[CHB][hapmap]
rs7597441	0.82[AMR][1000 genomes]
rs7597782	0.83[AMR][1000 genomes]
rs7598849	1.00[MEX][hapmap]
rs9287535	0.89[CEU][hapmap]
rs9287536	1.00[MEX][hapmap]
rs936835	0.84[CHB][hapmap];0.81[CHD][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141286200-141287600	Enhancers	Brain Substantia Nigra	brain
2	chr2:141286400-141287600	Enhancers	Liver	Liver
3	chr2:141286600-141287400	Active TSS	A549	lung
4	chr2:141287000-141287400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:141287000-141287400	Enhancers	Adipose Nuclei	Adipose
6	chr2:141287200-141287600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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