Variant report

Variant	rs10496849
Chromosome Location	chr2:141334108-141334109
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10179908	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs11688310	0.84[MEX][hapmap]
rs11693520	0.87[MEX][hapmap]
rs13006464	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs13013854	0.81[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap]
rs6732761	0.80[MEX][hapmap]
rs6751750	0.82[EUR][1000 genomes]
rs7571102	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs7587396	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7598849	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes]
rs9287536	0.81[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583192	chr2:141310721-141350100	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a
2	nsv459529	chr2:141321160-141350100	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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