Variant report
| Variant | rs13006464 |
|---|---|
| Chromosome Location | chr2:141333838-141333839 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:141323740..141325865-chr2:141332665..141335542,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10179908 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap] |
| rs10496849 | 0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs11688310 | 0.84[MEX][hapmap] |
| rs11693520 | 0.87[MEX][hapmap] |
| rs13013854 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap] |
| rs6732761 | 0.80[MEX][hapmap] |
| rs6751750 | 0.82[EUR][1000 genomes] |
| rs7571102 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap] |
| rs7587396 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7598849 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs9287536 | 0.89[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583192 | chr2:141310721-141350100 | Enhancers Weak transcription | Chromatin interactive regionmiRNA | n/a | inside rSNPs | n/a |
| 2 | nsv459529 | chr2:141321160-141350100 | Enhancers Weak transcription | Chromatin interactive regionmiRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
