Variant report

Variant	rs2380887
Chromosome Location	chr2:141321183-141321184
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141314211..141315888-chr2:141319868..141321651,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10169432	0.84[JPT][hapmap]
rs10188125	0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10928755	0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10928756	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11695464	0.84[ASN][1000 genomes]
rs12464264	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12615001	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs12619328	0.90[JPT][hapmap]
rs12620866	0.84[ASN][1000 genomes]
rs12622824	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs12692059	0.84[ASN][1000 genomes]
rs13003116	0.84[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs13383771	0.84[ASN][1000 genomes]
rs1352045	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1485847	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1485848	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs17806210	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3793154	0.84[ASN][1000 genomes]
rs59559230	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6430914	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs6723267	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap]
rs6723595	0.82[ASN][1000 genomes]
rs6732761	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs6734931	0.82[ASN][1000 genomes]
rs6735284	0.82[ASN][1000 genomes]
rs6738341	0.82[ASN][1000 genomes]
rs6738395	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs6751143	0.84[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs7569306	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7581067	0.89[CHB][hapmap]
rs9287535	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs936835	0.84[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583192	chr2:141310721-141350100	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a
2	nsv459529	chr2:141321160-141350100	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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