Variant report

Variant	rs17812473
Chromosome Location	chr10:26083599-26083600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10828875	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11014761	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17812509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17812828	0.80[ASN][1000 genomes]
rs58826087	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66988507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68104390	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72629703	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72629704	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72629705	0.89[ASN][1000 genomes]
rs72629706	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72629707	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72629708	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7896386	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26082800-26083600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:26082800-26083600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr10:26083000-26083600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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