Variant report

Variant	rs17812828
Chromosome Location	chr10:26143578-26143579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17812473	0.80[ASN][1000 genomes]
rs17812509	0.80[ASN][1000 genomes]
rs2367986	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2367987	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4405195	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66988507	0.80[ASN][1000 genomes]
rs68104390	0.83[ASN][1000 genomes]
rs72629703	0.81[ASN][1000 genomes]
rs72629704	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629705	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629706	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72629707	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72629708	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629710	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629711	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7896386	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3411313	chr10:26139815-26143622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3482285	chr10:26139862-26143599	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3323523	chr10:26139880-26143583	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26141400-26144000	Weak transcription	Brain Germinal Matrix	brain
2	chr10:26141600-26144400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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