Variant report

Variant	rs72629704
Chromosome Location	chr10:26108660-26108661
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17812473	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17812509	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17812828	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2367986	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2367987	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4405195	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58826087	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs66988507	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs68104390	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629703	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629705	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72629706	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72629707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72629708	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629710	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629711	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7896386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26106200-26116400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26106800-26109400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:26107000-26109800	Weak transcription	NH-A	brain
4	chr10:26107200-26109200	Weak transcription	Brain Germinal Matrix	brain
5	chr10:26107400-26117200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:26108000-26109400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:26108000-26109600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:26108400-26109800	Weak transcription	Dnd41	blood
9	chr10:26108400-26110000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:26108400-26117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:26108400-26117200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:26108400-26117600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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