Variant report

Variant	rs17817536
Chromosome Location	chr15:33992272-33992273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10162776	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2088141	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2088143	0.85[JPT][hapmap]
rs2280417	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2280418	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35962737	0.80[ASN][1000 genomes]
rs3736531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4779632	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs60021938	0.84[ASN][1000 genomes]
rs7174044	0.83[JPT][hapmap]
rs8037400	0.82[ASN][1000 genomes]
rs8037943	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33988800-33993200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:33988800-34002600	Weak transcription	Aorta	Aorta
3	chr15:33989000-34001600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:33990600-33993000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:33991000-33992800	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:33991000-33993200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:33991200-33993000	Enhancers	HSMMtube	muscle
8	chr15:33991400-33992400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr15:33991600-33996800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:33992000-33992800	Strong transcription	Brain Anterior Caudate	brain
11	chr15:33992000-33993000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr15:33992200-33992400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr15:33992200-33992400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:33992200-33993000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr15:33992200-33993400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr15:33992200-33993600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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