Variant report

Variant	rs2088141
Chromosome Location	chr15:34003021-34003022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10162776	1.00[CHB][hapmap]
rs12910954	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17817536	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2280417	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs2280418	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs34148440	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34781018	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35307665	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35962737	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3736531	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs4779632	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs56701853	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61308006	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:33993600-34016400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:34001400-34003400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr15:34001600-34004000	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr15:34001800-34003200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:34002000-34003200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:34002600-34003200	ZNF genes & repeats	Aorta	Aorta
9	chr15:34002600-34003200	Strong transcription	Brain Anterior Caudate	brain
10	chr15:34002600-34003400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
11	chr15:34002600-34015800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:34002800-34003200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
13	chr15:34003000-34023600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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