Variant report

Variant	rs4779632
Chromosome Location	chr15:33972507-33972508
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10162776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17817536	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs2088141	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2088143	0.85[JPT][hapmap]
rs2280417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2280418	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3736531	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7174044	0.83[JPT][hapmap]
rs74005949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037400	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8037943	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33933000-33976000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:33948000-33973400	Weak transcription	Psoas Muscle	Psoas
3	chr15:33951800-33974000	Weak transcription	Brain Substantia Nigra	brain
4	chr15:33957800-33975800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:33957800-33992000	Weak transcription	Brain Anterior Caudate	brain
6	chr15:33958200-33972600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:33966400-33972600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:33966800-33990000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:33971600-33978200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:33972400-33972800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:33972400-33973400	Enhancers	Aorta	Aorta
12	chr15:33972400-33973600	Enhancers	Fetal Muscle Leg	muscle
13	chr15:33972400-33973800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:33972400-33974200	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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