Variant report
Variant | rs1781940 |
---|---|
Chromosome Location | chr10:5202060-5202061 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10752005 | 0.80[ASN][1000 genomes] |
rs10795245 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs10904417 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10904432 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10904437 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10904438 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs11252962 | 0.89[AFR][1000 genomes] |
rs11252963 | 0.89[AFR][1000 genomes] |
rs11252964 | 0.89[AFR][1000 genomes] |
rs11252965 | 0.88[AFR][1000 genomes] |
rs11252967 | 0.88[AFR][1000 genomes] |
rs11252969 | 0.82[AFR][1000 genomes] |
rs11252970 | 0.89[AFR][1000 genomes] |
rs11252971 | 0.89[AFR][1000 genomes] |
rs11252973 | 0.89[AFR][1000 genomes] |
rs11252974 | 0.81[AFR][1000 genomes] |
rs11252975 | 0.91[AFR][1000 genomes] |
rs11252977 | 0.91[AFR][1000 genomes] |
rs11252979 | 0.91[AFR][1000 genomes] |
rs11252982 | 0.90[AFR][1000 genomes] |
rs11252983 | 0.90[AFR][1000 genomes] |
rs11252984 | 0.91[AFR][1000 genomes] |
rs11252986 | 0.92[AFR][1000 genomes] |
rs11252987 | 0.92[AFR][1000 genomes] |
rs11252988 | 0.92[AFR][1000 genomes] |
rs11252989 | 0.92[AFR][1000 genomes] |
rs11252990 | 0.92[AFR][1000 genomes] |
rs11252991 | 0.92[AFR][1000 genomes] |
rs11252993 | 0.91[AFR][1000 genomes] |
rs11252994 | 0.90[AFR][1000 genomes] |
rs11252995 | 0.91[AFR][1000 genomes] |
rs11252996 | 0.91[AFR][1000 genomes] |
rs11252998 | 0.85[AFR][1000 genomes] |
rs11252999 | 0.89[AFR][1000 genomes] |
rs11253000 | 0.89[AFR][1000 genomes] |
rs11253001 | 0.91[AFR][1000 genomes] |
rs11253002 | 0.91[AFR][1000 genomes] |
rs11253003 | 0.89[AFR][1000 genomes] |
rs11253004 | 0.91[AFR][1000 genomes] |
rs11253005 | 0.91[AFR][1000 genomes] |
rs11253024 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11253038 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs11492957 | 0.91[AFR][1000 genomes] |
rs11492958 | 0.91[AFR][1000 genomes] |
rs11492967 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11492968 | 0.82[AMR][1000 genomes] |
rs11511661 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11511664 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11517339 | 0.91[AFR][1000 genomes] |
rs11517340 | 0.91[AFR][1000 genomes] |
rs11517342 | 0.83[AFR][1000 genomes] |
rs11522542 | 0.91[AFR][1000 genomes] |
rs11524372 | 0.89[AFR][1000 genomes] |
rs11524375 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1155931 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12269559 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12355837 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12355966 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12356304 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12360316 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs12529 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12775468 | 0.80[ASN][1000 genomes] |
rs12776280 | 0.91[AFR][1000 genomes] |
rs17134471 | 1.00[ASN][1000 genomes] |
rs1761601 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1761602 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1761603 | 0.98[ASN][1000 genomes] |
rs1761604 | 1.00[ASN][1000 genomes] |
rs1761606 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1781927 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1781929 | 0.98[ASN][1000 genomes] |
rs1781930 | 0.98[ASN][1000 genomes] |
rs1781932 | 0.89[ASN][1000 genomes] |
rs1781933 | 1.00[ASN][1000 genomes] |
rs1781935 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1781937 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1781938 | 1.00[ASN][1000 genomes] |
rs1781939 | 1.00[ASN][1000 genomes] |
rs1781941 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1892404 | 0.80[ASN][1000 genomes] |
rs1937840 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1937845 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs1937875 | 0.87[AFR][1000 genomes] |
rs1937876 | 0.91[AFR][1000 genomes] |
rs1937877 | 0.91[AFR][1000 genomes] |
rs1937882 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1937902 | 0.88[AFR][1000 genomes] |
rs1937904 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1937906 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1937911 | 0.89[AFR][1000 genomes] |
rs1937912 | 0.89[AFR][1000 genomes] |
rs1937914 | 0.91[AFR][1000 genomes] |
rs1937915 | 0.91[AFR][1000 genomes] |
rs1937916 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1937918 | 0.91[AFR][1000 genomes] |
rs2151899 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2151900 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2154308 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2186175 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2226260 | 0.80[ASN][1000 genomes] |
rs2398103 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2398195 | 0.80[ASN][1000 genomes] |
rs2398196 | 0.80[ASN][1000 genomes] |
rs2398198 | 0.89[AFR][1000 genomes] |
rs2398199 | 0.91[AFR][1000 genomes] |
rs2398200 | 0.91[AFR][1000 genomes] |
rs2398201 | 0.91[AFR][1000 genomes] |
rs2398204 | 0.86[AFR][1000 genomes] |
rs2398205 | 0.91[AFR][1000 genomes] |
rs2801882 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs2801883 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs2895055 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2895063 | 0.87[AFR][1000 genomes] |
rs34074567 | 0.89[AFR][1000 genomes] |
rs34142252 | 0.91[AFR][1000 genomes] |
rs34573009 | 0.95[ASN][1000 genomes] |
rs34606065 | 0.97[ASN][1000 genomes] |
rs3750573 | 1.00[ASN][1000 genomes] |
rs4330990 | 0.98[ASN][1000 genomes] |
rs4436454 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4494227 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4547003 | 0.92[AFR][1000 genomes] |
rs4565809 | 0.92[AFR][1000 genomes] |
rs4622159 | 0.80[ASN][1000 genomes] |
rs4880708 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4880710 | 0.80[ASN][1000 genomes] |
rs4880712 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4880713 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4881403 | 0.83[ASN][1000 genomes] |
rs4881404 | 0.83[ASN][1000 genomes] |
rs4881408 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4881410 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60878270 | 1.00[ASN][1000 genomes] |
rs61854684 | 0.98[ASN][1000 genomes] |
rs61854686 | 0.88[ASN][1000 genomes] |
rs61854687 | 0.98[ASN][1000 genomes] |
rs61854697 | 0.98[ASN][1000 genomes] |
rs61854701 | 0.95[ASN][1000 genomes] |
rs61854702 | 0.95[ASN][1000 genomes] |
rs61854705 | 0.95[ASN][1000 genomes] |
rs6601911 | 0.89[AFR][1000 genomes] |
rs6601912 | 0.89[AFR][1000 genomes] |
rs6601913 | 0.89[AFR][1000 genomes] |
rs6601914 | 0.91[AFR][1000 genomes] |
rs6601919 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6601920 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6601921 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6601923 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7067921 | 0.98[ASN][1000 genomes] |
rs7070300 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7071406 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7072048 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7072750 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7074118 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs7080497 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7081702 | 0.91[AFR][1000 genomes] |
rs7084630 | 0.89[ASN][1000 genomes] |
rs7086693 | 0.91[AFR][1000 genomes] |
rs7086984 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs7089684 | 0.91[AFR][1000 genomes] |
rs7089964 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7090038 | 1.00[ASN][1000 genomes] |
rs7091223 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs7099915 | 0.91[AFR][1000 genomes] |
rs7100514 | 0.91[AFR][1000 genomes] |
rs72478267 | 0.92[ASN][1000 genomes] |
rs7896234 | 0.89[AFR][1000 genomes] |
rs7897031 | 0.88[AFR][1000 genomes] |
rs7898341 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7899887 | 0.91[AFR][1000 genomes] |
rs7902978 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7910445 | 0.91[AFR][1000 genomes] |
rs7910451 | 0.91[AFR][1000 genomes] |
rs7913871 | 0.87[AFR][1000 genomes] |
rs7913986 | 0.91[AFR][1000 genomes] |
rs7914117 | 0.80[ASN][1000 genomes] |
rs7917079 | 0.80[ASN][1000 genomes] |
rs7917637 | 0.91[AFR][1000 genomes] |
rs7918456 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7920135 | 0.80[ASN][1000 genomes] |
rs7920831 | 0.91[AFR][1000 genomes] |
rs7924169 | 0.91[AFR][1000 genomes] |
rs878766 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9731372 | 0.85[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs9794201 | 0.90[AMR][1000 genomes];0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv894792 | chr10:4832920-5498724 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
2 | nsv948794 | chr10:4863093-5227382 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
3 | nsv1045155 | chr10:4872239-5211318 | Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
4 | nsv869470 | chr10:4878904-5203685 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
5 | nsv466713 | chr10:4901798-5319679 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
6 | nsv549881 | chr10:4901798-5319679 | Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
7 | nsv534685 | chr10:4914018-5853324 | Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 68 gene(s) | inside rSNPs | diseases |
8 | nsv1050246 | chr10:4927428-5211318 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
9 | nsv549882 | chr10:4943518-5203864 | Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
10 | esv2763913 | chr10:4961021-5321407 | Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
11 | nsv1039386 | chr10:5008383-5348491 | Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
12 | nsv1036566 | chr10:5037926-5261426 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
13 | nsv549883 | chr10:5037926-5275762 | Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
14 | nsv1047484 | chr10:5076258-5261482 | Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
15 | nsv1036291 | chr10:5076258-5456234 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
16 | nsv540465 | chr10:5108345-5261482 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
17 | nsv540467 | chr10:5114577-5225365 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
18 | nsv540468 | chr10:5114577-5261482 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
19 | nsv540469 | chr10:5120774-5225365 | Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
20 | nsv540470 | chr10:5120774-5261482 | Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
21 | nsv540471 | chr10:5133561-5261482 | Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
22 | nsv540472 | chr10:5133561-5284334 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
23 | nsv1048081 | chr10:5149144-5321395 | Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
24 | esv3387745 | chr10:5201939-5324885 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
25 | esv3370619 | chr10:5201974-5324834 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
26 | esv3320807 | chr10:5202006-5324760 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
27 | esv3521675 | chr10:5202012-5324815 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
28 | esv3521676 | chr10:5202012-5324815 | Enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
29 | esv3332233 | chr10:5202023-5324788 | ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
30 | esv3405253 | chr10:5202043-5324758 | Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
31 | esv4943 | chr10:5202052-5324829 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:5194400-5206600 | Strong transcription | Liver | Liver |
2 | chr10:5198000-5202800 | Weak transcription | Adipose Nuclei | Adipose |
3 | chr10:5198200-5207200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |