Variant report

Variant	rs17819634
Chromosome Location	chr15:57165917-57165918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1627661	0.85[AMR][1000 genomes]
rs1657921	0.85[AMR][1000 genomes]
rs1657951	0.85[AMR][1000 genomes]
rs16977148	1.00[MEX][hapmap];0.92[AMR][1000 genomes]
rs16977186	1.00[MEX][hapmap];0.92[AMR][1000 genomes]
rs16977194	0.92[AMR][1000 genomes]
rs16977197	0.92[AMR][1000 genomes]
rs16977212	1.00[AFR][1000 genomes]
rs16977230	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4774901	0.85[AMR][1000 genomes]
rs4774904	0.85[AMR][1000 genomes]
rs4774907	0.92[AMR][1000 genomes]
rs8037361	0.92[AMR][1000 genomes]
rs935095	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv3401951	chr15:57151709-57176189	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57162200-57178400	Weak transcription	Thymus	Thymus
2	chr15:57163200-57166600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:57163800-57166000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:57164200-57169400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:57164400-57166400	Weak transcription	Aorta	Aorta
6	chr15:57164800-57178000	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:57164800-57178200	Weak transcription	Fetal Brain Male	brain
8	chr15:57164800-57178400	Weak transcription	Brain Anterior Caudate	brain
9	chr15:57164800-57178600	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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