Variant report

Variant	rs935095
Chromosome Location	chr15:57179728-57179729
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57176057..57187872-chr15:57206946..57217524,36	K562	blood:
2	chr15:57178056..57181492-chr15:57182204..57185235,4	MCF-7	breast:
3	chr15:57177826..57180634-chr15:57614648..57617463,2	K562	blood:
4	chr15:57178804..57180987-chr15:57202358..57204710,2	MCF-7	breast:
5	chr15:57179296..57179805-chr9:134270293..134270831,2	Hela-S3	cervix:
6	chr15:57179511..57180045-chr2:88315419..88316034,2	HCT-116	colon:
7	chr15:57178290..57182491-chr15:57208958..57213003,14	K562	blood:
8	chr15:57179137..57180957-chr15:57186379..57188550,2	MCF-7	breast:
9	chr15:57179533..57180056-chr19:39897223..39897954,2	Hela-S3	cervix:
10	chr15:57178055..57182351-chr15:57208260..57213543,21	MCF-7	breast:
11	chr15:57179205..57179847-chr19:9929100..9929741,2	NB4	blood:
12	chr15:57178054..57181022-chr15:57209016..57212878,5	MCF-7	breast:
13	chr15:57179277..57180087-chr2:237076534..237077101,2	Hela-S3	cervix:
14	chr11:65189736..65190426-chr15:57179620..57180205,2	Hela-S3	cervix:
15	chr15:57179564..57182313-chr15:57232225..57234178,2	K562	blood:
16	chr15:56536601..56538445-chr15:57177718..57180315,2	K562	blood:
17	chr15:57179591..57180366-chr15:57210381..57211366,2	NB4	blood:
18	chr15:57178197..57180890-chr6:86114463..86117112,2	MCF-7	breast:
19	chr15:57179607..57181296-chr15:57182021..57184256,2	MCF-7	breast:
20	chr15:57179306..57179916-chr15:57210725..57211317,3	MCF-7	breast:
21	chr15:57173403..57176748-chr15:57177855..57180719,3	MCF-7	breast:
22	chr15:57178897..57180716-chr15:57201391..57203977,3	K562	blood:
23	chr15:57179055..57180247-chr15:57209891..57211707,10	Hela-S3	cervix:
24	chr15:57023926..57025513-chr15:57178934..57180893,2	K562	blood:
25	chr15:57175109..57176620-chr15:57178319..57180528,2	MCF-7	breast:
26	chr15:57179250..57180024-chr15:57210182..57211483,8	MCF-7	breast:
27	chr15:57179314..57179819-chr22:46645649..46646585,2	HCT-116	colon:
28	chr15:57179121..57179818-chr16:90088822..90089542,2	HCT-116	colon:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MNS1-3	chr15:57178368-57180122	ENSG00000248500

No data

Variant related genes	Relation type
ENSG00000168505	Chromatin interaction
ENSG00000141013	Chromatin interaction
ENSG00000205643	Chromatin interaction
ENSG00000127452	Chromatin interaction
ENSG00000128016	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000137871	Chromatin interaction
ENSG00000140262	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12437713	1.00[ASN][1000 genomes]
rs1627661	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1652749	0.93[AMR][1000 genomes]
rs1657921	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1657951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977148	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977186	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977194	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977197	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977212	1.00[ASN][1000 genomes]
rs16977230	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977237	0.86[ASN][1000 genomes]
rs17819634	0.85[AMR][1000 genomes]
rs2585080	1.00[ASN][1000 genomes]
rs4774901	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4774904	0.85[AMR][1000 genomes]
rs4774907	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8037361	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57178200-57180200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr15:57178600-57179800	Active TSS	HSMM	muscle
3	chr15:57178600-57180000	Active TSS	A549	lung
4	chr15:57178600-57180000	Active TSS	Hela-S3	cervix
5	chr15:57178600-57180200	Active TSS	H1 Cell Line	embryonic stem cell
6	chr15:57178600-57180400	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr15:57178600-57180400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr15:57178600-57180400	Active TSS	Thymus	Thymus
9	chr15:57178600-57180600	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr15:57178600-57180600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:57178600-57181200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:57178800-57179800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:57178800-57179800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:57178800-57179800	Active TSS	Stomach Mucosa	stomach
15	chr15:57178800-57179800	Active TSS	HSMMtube	muscle
16	chr15:57178800-57180000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:57178800-57180000	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr15:57178800-57180000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:57178800-57180000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:57178800-57180000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:57178800-57180000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:57178800-57180000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:57178800-57180200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:57178800-57180200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:57178800-57180200	Active TSS	Fetal Muscle Trunk	muscle
26	chr15:57178800-57180400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr15:57178800-57180400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:57178800-57180600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:57179000-57179800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:57179000-57179800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:57179000-57179800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:57179000-57179800	Active TSS	Liver	Liver
33	chr15:57179000-57179800	Active TSS	Brain Germinal Matrix	brain
34	chr15:57179000-57179800	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr15:57179000-57179800	Active TSS	Fetal Lung	lung
36	chr15:57179000-57179800	Active TSS	Fetal Muscle Leg	muscle
37	chr15:57179000-57179800	Active TSS	Fetal Stomach	stomach
38	chr15:57179000-57179800	Active TSS	NHDF-Ad	bronchial
39	chr15:57179000-57180000	Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr15:57179000-57180000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:57179000-57180000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:57179000-57180000	Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr15:57179000-57180000	Active TSS	Brain Anterior Caudate	brain
44	chr15:57179000-57180000	Active TSS	Brain Cingulate Gyrus	brain
45	chr15:57179000-57180000	Active TSS	Brain Hippocampus Middle	brain
46	chr15:57179000-57180000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:57179000-57180000	Active TSS	Brain Substantia Nigra	brain
48	chr15:57179000-57180000	Active TSS	Colon Smooth Muscle	Colon
49	chr15:57179000-57180000	Active TSS	Duodenum Mucosa	Duodenum
50	chr15:57179000-57180000	Active TSS	Duodenum Smooth Muscle	Duodenum

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