Variant report

Variant	rs1627661
Chromosome Location	chr15:57177814-57177815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12437713	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1652749	0.93[AMR][1000 genomes]
rs1657921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1657951	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977148	1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977186	1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977194	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977197	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977212	1.00[ASN][1000 genomes]
rs16977230	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16977237	0.86[ASN][1000 genomes]
rs17819634	0.85[AMR][1000 genomes]
rs2585080	1.00[ASN][1000 genomes]
rs4774901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4774904	0.85[AMR][1000 genomes]
rs4774907	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8037361	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs935095	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57162200-57178400	Weak transcription	Thymus	Thymus
2	chr15:57164800-57178000	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:57164800-57178200	Weak transcription	Fetal Brain Male	brain
4	chr15:57164800-57178400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:57164800-57178600	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:57169200-57178600	Weak transcription	Fetal Lung	lung
7	chr15:57177000-57178800	Enhancers	Fetal Heart	heart
8	chr15:57177400-57179000	Enhancers	Fetal Thymus	thymus
9	chr15:57177600-57178600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:57177600-57178600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:57177600-57178600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr15:57177800-57178600	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:57177800-57178600	Enhancers	K562	blood
14	chr15:57177800-57178800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr15:57177800-57178800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr15:57177800-57178800	Enhancers	Primary B cells from cord blood	blood
17	chr15:57177800-57178800	Enhancers	Primary B cells from peripheral blood	blood
18	chr15:57177800-57178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:57177800-57179000	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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