Variant report

Variant	rs2585080
Chromosome Location	chr15:57263191-57263192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr15:57263138-57263755	K562	blood:	n/a	n/a
2	CEBPB	chr15:57263090-57263751	A549	lung:	n/a	n/a
3	CEBPB	chr15:57263092-57263918	K562	blood:	n/a	n/a
4	CEBPB	chr15:57263108-57263774	K562	blood:	n/a	n/a
5	ZNF384	chr15:57263064-57263896	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57261844..57263544-chr15:57271380..57273128,2	K562	blood:
2	chr15:57262336..57264742-chr15:57265375..57267744,2	K562	blood:
3	chr15:57253721..57256073-chr15:57262899..57264820,2	K562	blood:
4	chr15:57208964..57210715-chr15:57261991..57264737,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000222586	TF binding region
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12437713	1.00[ASN][1000 genomes]
rs1627661	1.00[ASN][1000 genomes]
rs1652733	0.82[AFR][1000 genomes]
rs1657921	1.00[ASN][1000 genomes]
rs1657951	1.00[ASN][1000 genomes]
rs16977148	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977186	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977197	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977212	1.00[ASN][1000 genomes]
rs16977230	1.00[ASN][1000 genomes]
rs16977237	0.86[ASN][1000 genomes]
rs4774901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774907	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8037361	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935095	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57256200-57263400	Weak transcription	Lung	lung
2	chr15:57256200-57264400	Weak transcription	NH-A	brain
3	chr15:57256200-57265200	Weak transcription	Fetal Brain Male	brain
4	chr15:57256200-57265800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:57256400-57263600	Weak transcription	Brain Germinal Matrix	brain
6	chr15:57256400-57264000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:57256400-57265200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr15:57256800-57263600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:57256800-57263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:57256800-57264400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:57256800-57277200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:57257200-57264600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:57257200-57274600	Weak transcription	Adipose Nuclei	Adipose
14	chr15:57257400-57263600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:57257800-57265400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:57258000-57263600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:57258200-57264000	Weak transcription	NHDF-Ad	bronchial
18	chr15:57259400-57268200	Enhancers	HepG2	liver
19	chr15:57259800-57264600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr15:57260000-57263800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:57260000-57272200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:57260000-57272400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:57260200-57263800	Weak transcription	Fetal Heart	heart
24	chr15:57260600-57267000	Enhancers	Dnd41	blood
25	chr15:57261000-57263600	Weak transcription	Brain Angular Gyrus	brain
26	chr15:57261000-57263800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:57261000-57269400	Weak transcription	Psoas Muscle	Psoas
28	chr15:57261200-57263200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr15:57261200-57263200	Weak transcription	Gastric	stomach
30	chr15:57261200-57263600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:57261200-57264800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr15:57261200-57272800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:57261200-57279000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:57261400-57263400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:57261400-57263400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:57261400-57263600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:57261400-57263600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:57261400-57263600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:57261400-57264600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr15:57261400-57265400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr15:57261400-57272000	Weak transcription	Colon Smooth Muscle	Colon
42	chr15:57261400-57275000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:57261600-57263600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:57261600-57264000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:57261800-57264000	Weak transcription	Primary T cells from cord blood	blood
46	chr15:57262000-57263400	Weak transcription	Placenta	Placenta
47	chr15:57262000-57263400	Weak transcription	Left Ventricle	heart
48	chr15:57262000-57263600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:57262000-57263600	Weak transcription	Brain Substantia Nigra	brain
50	chr15:57262000-57263600	Weak transcription	Fetal Intestine Large	intestine

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