Variant report

Variant	rs17821322
Chromosome Location	chr15:58703100-58703101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11854624	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11856159	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857380	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12440032	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440217	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17240869	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17240876	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17821310	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55696635	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55993842	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62000868	0.90[ASN][1000 genomes]
rs62000870	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58694800-58716000	Weak transcription	Esophagus	oesophagus
2	chr15:58702200-58703400	Flanking Active TSS	Dnd41	blood
3	chr15:58702400-58703200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:58702400-58703200	Active TSS	Primary monocytes fromperipheralblood	blood
5	chr15:58702400-58703200	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr15:58702400-58703200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:58702400-58703200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr15:58702400-58703200	Active TSS	Brain Hippocampus Middle	brain
9	chr15:58702400-58703200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr15:58702400-58703200	Flanking Active TSS	K562	blood
11	chr15:58702400-58703200	Active TSS	Osteobl	bone
12	chr15:58702400-58703400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:58702400-58703400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:58702400-58703400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr15:58702400-58703400	Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr15:58702400-58703400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:58702400-58703400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr15:58702400-58703400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:58702400-58703400	Active TSS	Brain Angular Gyrus	brain
20	chr15:58702400-58703400	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr15:58702400-58703400	Active TSS	Monocytes-CD14+_RO01746	blood
22	chr15:58702400-58703400	Active TSS	NHDF-Ad	bronchial
23	chr15:58702400-58703400	Active TSS	NHLF	lung
24	chr15:58702400-58704000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr15:58702400-58704800	Active TSS	Liver	Liver
26	chr15:58702600-58703200	Active TSS	Primary B cells from cord blood	blood
27	chr15:58702600-58703200	Active TSS	Adipose Nuclei	Adipose
28	chr15:58702600-58703200	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr15:58702600-58703400	Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr15:58702800-58703400	Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr15:58702800-58705600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:58703000-58703200	Active TSS	Primary T cells fromperipheralblood	blood
33	chr15:58703000-58703200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:58703000-58703200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:58703000-58703200	Active TSS	Muscle Satellite Cultured Cells	--
36	chr15:58703000-58703200	Active TSS	HSMMtube	muscle
37	chr15:58703000-58703400	Enhancers	Primary hematopoietic stem cells	blood
38	chr15:58703000-58703400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:58703000-58703400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:58703000-58703400	Enhancers	Fetal Kidney	kidney
41	chr15:58703000-58703400	Active TSS	GM12878-XiMat	blood
42	chr15:58703000-58703600	Active TSS	Fetal Thymus	thymus
43	chr15:58703000-58703600	Active TSS	Thymus	Thymus
44	chr15:58703000-58704000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr15:58703000-58712800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links